Aips023470.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052979.1:545866-549279[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 1.5 10.4 5.9 1 23 151 174 151 174 0.97 2 17 0.00029 0.029 15.8 0.9 1 23 183 206 183 206 0.96 3 17 0.017 1.8 10.2 0.7 2 23 219 241 219 241 0.97 4 17 0.00039 0.039 15.4 0.8 1 23 250 273 250 273 0.97 5 17 0.00011 0.012 17.0 1.3 1 23 285 308 285 308 0.97 6 17 8.9e-05 0.009 17.4 0.4 2 23 334 356 333 356 0.97 7 17 0.0014 0.14 13.6 1.2 2 23 366 388 365 388 0.96 8 17 0.078 7.8 8.1 1.2 3 19 394 410 392 413 0.92 9 17 0.00058 0.059 14.8 0.5 2 21 418 437 417 440 0.94 10 17 0.37 37 6.0 2.2 3 23 450 471 449 471 0.93 11 17 0.00077 0.078 14.4 3.5 1 23 476 499 476 499 0.94 12 17 0.00039 0.04 15.3 1.8 2 23 512 534 511 534 0.96 13 17 0.17 17 7.0 0.4 1 23 561 584 561 584 0.92 14 17 0.51 51 5.6 0.1 2 23 591 612 590 612 0.91 15 17 0.018 1.9 10.1 1.6 2 23 618 639 617 639 0.97 16 17 0.019 1.9 10.0 0.1 1 23 705 727 705 727 0.97 17 17 0.082 8.3 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- ATGGACCTAGATGTTAAGATTAAAGTAGAAAAAGATGATTCAAGAAAAGATCCTACCTCATTTTTGCCCGAGGAGCCAATGTCTtatgaaattaagaaaaaaaagaaaaagaagaagaagagaaaaGAGGAAGATGATCCTTTTAAAGATATTGATGATAAAGTGGGAATCAAGATTGAGCCGTTAACTCTGTTGGATCCGGAGGTTAAGATCAAGGTTGAGGATATTGAGGTGGAATTGGATTTTAATGATTTCGGAGACAACGGCTTAGTTCACGACGGTGACAATGACGACAGTCAAGAGCCAGCCGTCAAAATAGAGCCCCAGAACCACGACGCCGTCCTTCTAACATTCGAGAGCGTGATCAGTGAGAAACCAGTGCTTGTCGCTGATAGCTCCGAAATGTTCCAATTCTCCAAGAGCGACGTACCCATCAAACATGCCCCAACACACGTCTGCAAAGTCTGCCATCTAGTCTTTCAATCAACAAAAACTCTAAGAATGCATcagaaaagaaaacacaaagtCTTCAGAAAGTCCTTCAAACATATTTGTGATTATTGTGGCATGTCTTACGAGATGAAGAACAGTTTAGTTGCTCATATTAAGAGGAAACATGGACCAAATGCAAGTCCAGATGATCGAGAAGAACGGACTTGTGAAATATGCGCTTTGGTCTTCAAAGGCATGACCCGGTTACGCATGCATATGAGACGGAAGCATGGCGCTTTCCAAGAATCCTTTAAACATGTTTGCGAAGACTGTGGTTTAACCTACGATAAGTACAGAAGTTTAATAGTCCATATACAACGTAAAcattctaataataaaaaacctgaAGTCAGTCAATGGTACAACTGTCCGTTCTGccctaaaatatttacaaagagaGAAACTTATGCTAGACATGTGCAGAGAAAGCACCGTGTTGCAGACGACAATATAAAACAAGAAGATAATGATTTGGAGGATTGTAGGAATAATGAAACTGGTGAGATCACTTGCAAAGAATGCCCTCTAGTCTTTTCGTCCATTGGTTTCTTAAAACTTCACATGAGAAGGAAGCATAATGCGTTGAGAGAAGATTTTAGGTTGAAATGCCGGATTTGTAACTTGTCTTACGATAAAATCGAGAGTTTGAAACGGCATGTGCGGAGAAAACACGACAAAGGATCTCATTGTGAAGTTTGTAACAAACAATTTGATACACGAGAGATGTATCTTAACCATTCTCACGTGAAAGCGATAAAGGAATGCAATATTTGTGGATTGATCTTCGCATCTCAAGGCGGTCTGGCCAAGCATTTACGGTGCACACACAAACTAGATTCACCGAAGACAGTCTTCTGCAATCTATGTAACGAAGGTTTCCACGACAAACGACAGCTAAAACCGCATTTTATGAAGGTGCATTTAAAAGTTTCCTACACTTGCAGATACTGCAAAAAGATATTTAAAGCGAAAGAGAGTTATAGACGCCACATATTATTTAAGCACCCAAATGCAAATCATTTTAACCCTCAGAACGCGCAGAAATGCGAACAATGTAGTGCGACTTTTAAAGACGAATTTGATCTTTGTCGTCATATAAATATAAGCCACGGTCGCCCTGAAGATATGACGCCAGAAGAAAGAGAAATGCTAGAAATAAAAAGAGAAGATCAGGATATAAAGGACCATTTCCAATGCACCAAGTGCCCGGACACATACCTTACTTGGGAACAGTTGAAATTGCATTACGAGGCAACGCATCATAATATAGAAGAGACTCAGTGTCAAATATGTGGGGAGATACTTCCTGGAAACGAATTACAAAAGCATATAAAAAGTCAGCACACAGATACGGATATGCAATGCAAATACTGTGAGTTCAAGACAACTGTTAGAGTTAGTATGACACAACACATGCTCAGGCATAAGAACGCAGAAACAATTCACTGTGAGTACACTGGTTGCAAGTATAAGACGTTTTACGATGGTGCTATGGAGAAACATAAAAGGAAACATGCAGATCTTGGGGTCAAACTCCAATGTACGCAGTGTCCGTTCCAATCAATGAACAAATACATCTTAAAATATCACGAAGAAGCTCACGAAACTGGTAAAAAACGTTACATGTGTGACCAATGTGATTATGCAACGATTCTACCAGCAAATCTTGTACAGCATAAATATAAGCACTCTACGGAGAAGAGATTCAAATGTGAGGTTTGTCCGTTTGCAACGAAGTATAATACTTCACTCAGGTTCCATGTTAGAAAAAAACACTGTGATCTACCGACATTCAGTtaa
- Protein Sequence
- MDLDVKIKVEKDDSRKDPTSFLPEEPMSYEIKKKKKKKKKRKEEDDPFKDIDDKVGIKIEPLTLLDPEVKIKVEDIEVELDFNDFGDNGLVHDGDNDDSQEPAVKIEPQNHDAVLLTFESVISEKPVLVADSSEMFQFSKSDVPIKHAPTHVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPNASPDDREERTCEICALVFKGMTRLRMHMRRKHGAFQESFKHVCEDCGLTYDKYRSLIVHIQRKHSNNKKPEVSQWYNCPFCPKIFTKRETYARHVQRKHRVADDNIKQEDNDLEDCRNNETGEITCKECPLVFSSIGFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKLDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHILFKHPNANHFNPQNAQKCEQCSATFKDEFDLCRHINISHGRPEDMTPEEREMLEIKREDQDIKDHFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKSQHTDTDMQCKYCEFKTTVRVSMTQHMLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00042908;
- 80% Identity
- -