Aips025229.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052982.1:6913954-6915549[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.47 47 5.7 1.3 2 23 214 236 211 236 0.88 2 10 5.4e-05 0.0054 18.1 1.3 1 23 242 264 242 264 0.99 3 10 0.0037 0.37 12.3 4.7 1 23 270 293 270 293 0.96 4 10 0.008 0.81 11.2 0.1 2 20 300 318 299 320 0.93 5 10 5.6e-06 0.00056 21.2 3.7 2 23 339 360 338 360 0.96 6 10 5.1e-07 5.1e-05 24.4 3.2 1 23 367 389 367 389 0.98 7 10 0.0055 0.55 11.7 2.5 1 19 395 413 395 417 0.93 8 10 6.8e-06 0.00069 20.9 2.1 1 23 423 445 423 445 0.96 9 10 1.4e-05 0.0014 19.9 2.6 1 23 451 473 451 473 0.98 10 10 1.3e-05 0.0013 20.0 3.9 1 23 479 502 479 502 0.98
Sequence Information
- Coding Sequence
- ATGTGTGACGAAGACGAAGCCTACTGTCGCTTGTGCGCCGAACCAACGACAAAAGAAACCCTAATATCACCAGATGAAGATGTTGGAATCAATTCGAAAATAGCCATGAAAATGAAATGGATAAATATTGATGTTACAAGCACTGAAACTCTTCCGAAAAGCATTTGTTTCTCATGCTTCGATCTACTAGAACGTACATGGTCCTTTTTACACAACGTAAGAACcgcacaaacaaaattaaacgaGATATTCTTGAAAACAGAAAGCAAGGAAAATTTGGACACTGATGTTAATAATAAAGCAAATGATGAGGGCAAACCGGTAAATGTCGACTGGGAGGACTTTGAGGACATAAAGCATGATGTAAAACCAGAAATAATTGGTGAGGAAATACAAATAGTAGACCCTAATTCTTTGATAGAGCTAGCAACCGCTGCTGTAAAGGTAGAGAGACTGAGTGTGGACGAAATCCTTCAAAATTCCGATGGTTTCCACAGCACCGATAGTGATGAACCTCTGTACATGGCcgtaaagaagaaaaaattaaaaaagaaaaagaaattgccTTACAACTCCGATTTTGACAACGCAAGCGATGACAAGGAGTCTGAAAACCTGACTTGGGATGATTATATGTGCCGTTGTGCAGACTGTGATGCTCAATGCAAGAATATCATGTCTCTACGCTTGCATGCGATACAAATACACAACCATTGCTGTATCTTCAAGTGCTCAGACTGCGGTaaagtgttaaataattataaaacatttgtCACACATGTCCGATCCCACAAAAAATGGCTCAGATATTGCTGCGAGTTCTGTAATAAACGTTTCACGAAGGCATCCATTTTGAAAAAGCATAAAAACAGTATCCACATCAACCCTTATCGGACTACATGTCAAAACTGCGGTACAATATTTGATAGTGAACAATTACTACAAGACCACATTGTTAAGTTTGCAAAGAGCTACCGTAAACGTATGAAATGTGAAAAGTTGGAAAACGAATTGAAATGTGAACATTGCcaaaaagaatttaaatccCGTAGTAATTTGCAGCAACATAAACTTATACATACAGAGCGTAGCAGAGATTTCTCATGCCACATTTGCGGGAAAATGTTCTTCACGAAGGGTACGTTGAGTACTCACATGATGACCCACGATGAGACGAAGCCTTTCAAATGTGAATTCTGCCCCATGACGTTCAGAGCCCGAGGAAATCTCCAATCCCACTGCAGTCTCCATTCCGGAACAAAACCCTTTGTCTGCGAGCAATGCGGTAAAAGCTTCCGCGTGAAAAGACACTTGAAATCTCACTCCATCGTTCACACAGACTTAATGCCTTACGTTTGTGGATATTGTAACAAAACTTTTAGGTTTAAAACCCGTTTGAATTTACATATACGGCAACATACAGGAGCTAAGCcttataaatgtgtttattgTCAACGGGACTTCACGAATGGGTCTAATTTTAAGAAACATATGAAACGTAGACATAATATTGATACATCTAGGAAGCGGTACACAAATATTCTTGGTGCAGAACAAAGTATGGAAACGAGTGACGTTGAAGCGATTCAGACGTAG
- Protein Sequence
- MCDEDEAYCRLCAEPTTKETLISPDEDVGINSKIAMKMKWINIDVTSTETLPKSICFSCFDLLERTWSFLHNVRTAQTKLNEIFLKTESKENLDTDVNNKANDEGKPVNVDWEDFEDIKHDVKPEIIGEEIQIVDPNSLIELATAAVKVERLSVDEILQNSDGFHSTDSDEPLYMAVKKKKLKKKKKLPYNSDFDNASDDKESENLTWDDYMCRCADCDAQCKNIMSLRLHAIQIHNHCCIFKCSDCGKVLNNYKTFVTHVRSHKKWLRYCCEFCNKRFTKASILKKHKNSIHINPYRTTCQNCGTIFDSEQLLQDHIVKFAKSYRKRMKCEKLENELKCEHCQKEFKSRSNLQQHKLIHTERSRDFSCHICGKMFFTKGTLSTHMMTHDETKPFKCEFCPMTFRARGNLQSHCSLHSGTKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCGYCNKTFRFKTRLNLHIRQHTGAKPYKCVYCQRDFTNGSNFKKHMKRRHNIDTSRKRYTNILGAEQSMETSDVEAIQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00831485;
- 90% Identity
- iTF_00043804;
- 80% Identity
- -