Aips001870.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- L
- Assembly
- GCA_028554685.1
- Location
- CM052955.1:11285552-11300519[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5e-06 0.00016 22.9 1.7 1 23 60 82 60 82 0.99 2 17 0.65 66 5.2 5.8 1 23 88 110 88 110 0.97 3 17 8.8e-06 0.00089 20.5 4.1 1 23 116 138 116 138 0.99 4 17 2.7e-05 0.0028 19.0 0.1 1 23 144 166 144 166 0.98 5 17 0.0013 0.13 13.8 0.0 2 23 182 204 181 204 0.94 6 17 6.2 6.3e+02 2.1 0.1 9 23 235 250 231 250 0.93 7 17 0.31 32 6.2 0.0 3 23 302 322 301 322 0.97 8 17 0.17 17 7.0 0.0 3 23 336 356 335 356 0.91 9 17 0.00057 0.058 14.8 0.3 1 23 364 387 364 387 0.95 10 17 0.036 3.6 9.2 0.0 1 23 392 415 392 415 0.92 11 17 0.014 1.4 10.4 0.1 1 23 476 500 476 501 0.94 12 17 0.00021 0.021 16.2 0.1 2 23 564 585 563 585 0.96 13 17 0.06 6.1 8.5 0.0 1 23 593 615 593 615 0.97 14 17 2 2.1e+02 3.7 0.8 2 23 623 644 622 645 0.94 15 17 0.91 92 4.8 0.3 1 23 722 744 722 744 0.94 16 17 0.0036 0.37 12.3 0.1 1 20 752 771 752 774 0.95 17 17 0.16 16 7.1 0.3 1 23 781 803 781 803 0.94
Sequence Information
- Coding Sequence
- ATGAATTCTTCTGCTTCGAGAGAGGCGCTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCCTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCGCCGGCGTCCACGCCCACCTCGGCCGACGCCGCTGACGCCGACGCCGAGCCGCCCTTCACGCTGGGCGCCACCGAGCACACCCCCTACCAGTGCCAGTTCTGCGATAAAGCCTTCCCCAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAGATGCCGTTCAGGTGTGAGTTCTGCTCGCGTCTATTCAAGCACAAGCGGTCCCGCGACCGCCACGTCAAGCTGCACACCGGGGACCGCAAGTACCGCTGCGCTCACTGCGAGTCTGCCTTCTCCAGGAGCGACCACTTGAAGATCCATATGAAGACTCACGACAACCAGAAGCCGTTCCAGTGCACGGTCTGCAATAGAGGGTATAACACGGCTgccgctctgacgtcacacatGCAGGGTCACAAGAGAGACAGGGAGGGCCGGGAGCCCGACAGACGCAGGGCGCTACGATGTCTGAGGTGCGGGGATGCCTTCCGACGGCCAGACCTGCTGCAGGCACACATGGTGAGCGCGCACGGTGTGGACACTGCCGCTCTGACTCCACCGCGGCGCGTTGCATCCCAGCCGCCACCCACACTACTGGCTTGCATCTACTGCACTCGCGATACATTCACCAGCATGGAACAGTTACAACTACATGTTCGCGCAGCACACTCAGCCTTACTAAATGGCGAAGCACCAGTCCAAGTAGACCAGCCTGCACCCACAGACCTAAGCCGACGAGCGCCTGATGATGTGCCCCCAGTAAAACGCCCTCGCTCCGGCTCTGGCACCCCACAAACTAACTTATCGCCGAGCACACTGCTCTGCAATCAATGTGATGCTGCACTACCAGATTTTGAAGCATTTCGGGCACATTTGAAAGGCCATATTGAAGAAGGAGGAGAGCTGCGGTCAAGTCCTGCTCCTTGTGTTCACTGTGGCGCTACGTTTGCGGACGCCGCGGCTTCGGAGCGCCACCTTACAGCGCATTACTTGGCAGTTTCGTGCGAGTACACTTGCCATAGTTGTGCTCGGAGCTTTGCTGCGCCTGATGACTTGCAGAAACATTTACTTGAATTGCACGCGCATCATCTGTATAGATGCGCTCTTTGCAAGGAAGTTTTTGATTCGAAAGTGGCGATTCAGGTGCATTTTGCAGTGGCACACAGTGGTGAAAACAAAGTGTGGGTATGTCGTTCTTGCGGTGCGAGCGCGGGAGCTCTTCGCTCGGAGGCCGAGGGCGCGGCCCACGTGCGTTCTCTCCACGCGGCCGCAGCCCCACGCTGTGCATGCGGAGCCCTGCTCGGAAGTGGGGTCGCTGCGAGGACCGCTCGACCACATCGCGCGTATCGGTGTCCCGTACCAGCTTGCAATGATGCATTTGCTGTGCAGTACTTGCTTGAAAGACACATGCAGGCTCATCATGCAATGCAACAGCAGGTTCTTAACGGTGACTTACCAAGAACAAAACGAATGGACTCAACAAACGGCGGTGAGGGTGGTGATGAGACACGGTCCCAATGTTCCCCCGGCGCAGACAGTGGAGGTGTGACCACAGCGGTGGTGGCAGCCAGTGAGGAACGAAGACGGAAGAACGGTGCTGTAGCCTTGCAGTGTGCTTACTGTGGGGAGCGCACGAGGAGTAGGGCAGAACTGGAGGCGCACACACGAGCTCACTCAGGGGCCGCGGCTGCGAGGCACAAGTGTCTGATCTGTGATGAAGTGCTGCCGTCTGCAGCGGTGCTTGCTGAACATAAGCTCACACACTGCAAAGTGGTGTCAGGCGACACATGTTCCCGTTGCCGTGCGCGACTGGTGTCTGAGGACTCGTTCCTGGGGCACATGGCACGCCACCACCCCGCGCTGCCGGCGCCCTGTGTCGTCTGCCGACAGACACTCGCATCGGAGGCAGAGGCGAGACTGCACGCTCGCTTCCATCTGCGACCCGGGGAAGATGAGCAGAGGTGCGCCATATGTCTCCGTGCGCTCCCGGAGGGCGAGGCAGGCTCGGGCGCACGCGCATGCTCGGCGTGctacgcgcggcacgcggcccCCCGCCCCGCGCGCCCCCCTCCTCCAGCTGACCACGACTGCCGTCTGTGTCGCCGCGCGCTCGGCTCCCCCACACGCCTGCAAGCACATCTCATCGAGCACACGTTCGCTGGTATCGGAGCCTTCACCTGCTACCTGTGCTCCGCGGTGTTCACGAGCGCGGCTGGCCTGCAGCGTCATCTTCCGGAGCATGCGTCCGCGCCGCGGCCCTATGACTGCGCAAGATGTGGACTCAAGTTCTTCTTCCGAGCTGAACTTGATAATCACGCATTCGTACATCTTGAAGAGGCTGAGATTGCTCAGCGAGCTTTCTATGAAGCGTACGCTCGGGGTGCGGCGTCGGCGTGGGCCGCGCTGGCACCGCCTGAACCTCGAACGTCGCCGCCACAAGCTGAAGTTAAGCGTGAGCCGGAGATAAAGGAGGAACGAGGAACTGATGAGTATATCGAGGTGTCGTCCCCGCCCCCCGCAGCCCCGGCGCCAGCGCCCCCCGCCCCTCCGTCGCCCGCGCCGGTCGTGAAGCAAGAGAAGCCTGACGAGGAGTAG
- Protein Sequence
- MNSSASREALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADADAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTAALTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEAPVQVDQPAPTDLSRRAPDDVPPVKRPRSGSGTPQTNLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGASAGALRSEAEGAAHVRSLHAAAAPRCACGALLGSGVAARTARPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGDLPRTKRMDSTNGGEGGDETRSQCSPGADSGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLVSEDSFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGSGARACSACYARHAAPRPARPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPQAEVKREPEIKEERGTDEYIEVSSPPPAAPAPAPPAPPSPAPVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -