Aips007945.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052961.1:11882783-11884698[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-11 4.8e-08 33.5 0.0 2 38 24 59 23 62 0.90
Sequence Information
- Coding Sequence
- ATGTGCATATTAGATCCAGCCCTCGatatcaaaataaaaacaacgaaAGAAAAGAGGAAACAATATAAAGAAAAGGAATTAATAAAAGCTATAAATGCAGTTAAAAATGGCATGAGTAGACAATATGCAGCTAAAAAGTTTCAAGTACCTCGATCAACGCTTCTCTTCCGTTTACAACGTTTAGATAGAgttatcctgcgtccaggtccTCCTACAATTTTATCACCAGAAGATGAGAATTCCCTAGTTAACTGGATACTCGACAGCTCAGAAGAAGGATTCCCTCGGAGCAGGAGAGATATTCAAGCCATGGTTTCGGAATTTCTTGTAaacgaaaagaaagaaaatctttttaaaaacaataaaccaGGTGTTAAGTGGGTAAAACTCTTTTTGAAGAGACATCCCGAGGTTGATCCAAGCGCCCTGAAAGAGTTACTTTAG
- Protein Sequence
- MCILDPALDIKIKTTKEKRKQYKEKELIKAINAVKNGMSRQYAAKKFQVPRSTLLFRLQRLDRVILRPGPPTILSPEDENSLVNWILDSSEEGFPRSRRDIQAMVSEFLVNEKKENLFKNNKPGVKWVKLFLKRHPEVDPSALKELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039724;
- 90% Identity
- -
- 80% Identity
- -