Aips018047.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052972.1:7780368-7785258[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.8e-05 25.3 0.0 3 39 17 53 15 56 0.94 2 2 9.9e-07 0.0013 19.4 0.0 5 38 132 166 130 171 0.87
Sequence Information
- Coding Sequence
- ATGCCAAGAAAAAAGGAACGCACCACTACGAAAGCGTCTTGGACCCTTGAAACTTTAGAAAACGCAGTCGAAAAACTTCAGAGTGGTGGTACATCAGTATACAAGGTATCAAAAGAGACTGGAATACCCTACAGCACGTTAAAGAAGAGATTCAGGTTAGCTAAATTTAACGATCCTAGCTACAAATGTCCTCCAAAACTAGGAAGGCCCTCTGTGTTCACTGTGGAACAAGAAGCCATTCTGGCTGATCATCTacaaaaaatgtcaaataaattttatGGACTGACGAGGGCTCAGTTTTGTAAGAACTATCGATGGACAATGCCAAAAATCAAGGGACCAGCGGCGAAACCCAAAAAAAGGGAATATACTGTGAAACATTCAAAAAATATGATAGAATTGGCAGTAGAAGCATTAAGAAAGAAAACGATGTCTTCATACGAAGCAGAAAGAACTTTTGGGATACCTCGTCGAACTTTATTGGACAAGCTACATAATAAACACCCTAAAAGTCCAGGATGCCCAACTCGGCTAACTGATGAGGaggaagataatataaaaagagTGTTAATTGCAGCCGCCGAATATGGCAGTCCTTTGACCCTTCTGGATTTGCGAATTGTTGTACATAGatatttggaGTTGAAGTCATCGCTGATGCCAAAGGCTCCCGATAGCTTGAATAACTTGTGTATCAGGAGTATCAATGCTTACATGCAAAATACTGAGGAATCCTCCTCACAACTATCAACTGTTCATTACTTGAGTAAAATTTCAAGGAACGACCAAGCAAATATgacatttattaacaaaataccaGAATGCCTACAAaccaaaaaaacgaaaattgtAATTACCTCTGATGTCACTATCAAAGCAGGATCGTCTCAAAAAAACCTGCAAAGTAAGCAAGGAAATACTAATCTTAAAATGAAAGGGGTCAGAATATCACGGTCTGCCTTGCACATGGAATTActcccaataaaaaaagaaatggtagcTAATAAAAGAAAAGCCCTAGAAGAAATTACACAAGAAATAAAAGAAGACGTGGCATGTAtgaagagaaaaataataagtaaggaAACTAGAAAAAAGAAGTTGCAGAAGACGTACAAACCTATCAAACAAAGAAAGAAGAGATCCGATAGTGAATCCAGCATTGAAATGTCTGTAGCTGAAACGGACGATTCAGAATATGAAACTATGGACGAATTCATCAGACACTACCAACAAGAAGAACAAGAAAACGTAGAACCATCAATAAGTTACGGAATGTCTGACATTGAATATTTCACAGAGAAtggtaataaatttaaaacagaTTCCTGGATTTTGGCTAAATTTGCTACAAAAAAGAGCGTAAAGCATTTCGTAGGCAAAGTAATATCGATGAAAGATGACGTGCCTGAGGTCAAATTTGTGAGGAAAGTGAaggaatcaaaatttaaaagaggATCAGTGTTTACTTATCCTACAATAGATGATATTTGTACTATGAAGCATTTAGATGATATTGTTAGGGTATTGCCTGAGCCAAACATTTCTCGAAGGGGTCATATCatatttaatattgatttaaGTAATTACAACATCCAATAA
- Protein Sequence
- MPRKKERTTTKASWTLETLENAVEKLQSGGTSVYKVSKETGIPYSTLKKRFRLAKFNDPSYKCPPKLGRPSVFTVEQEAILADHLQKMSNKFYGLTRAQFCKNYRWTMPKIKGPAAKPKKREYTVKHSKNMIELAVEALRKKTMSSYEAERTFGIPRRTLLDKLHNKHPKSPGCPTRLTDEEEDNIKRVLIAAAEYGSPLTLLDLRIVVHRYLELKSSLMPKAPDSLNNLCIRSINAYMQNTEESSSQLSTVHYLSKISRNDQANMTFINKIPECLQTKKTKIVITSDVTIKAGSSQKNLQSKQGNTNLKMKGVRISRSALHMELLPIKKEMVANKRKALEEITQEIKEDVACMKRKIISKETRKKKLQKTYKPIKQRKKRSDSESSIEMSVAETDDSEYETMDEFIRHYQQEEQENVEPSISYGMSDIEYFTENGNKFKTDSWILAKFATKKSVKHFVGKVISMKDDVPEVKFVRKVKESKFKRGSVFTYPTIDDICTMKHLDDIVRVLPEPNISRRGHIIFNIDLSNYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -