Basic Information

Insect: Agrotis exclamationis
Gene Symbol: -
Assembly: GCA_950005045.1
Location: OX465438.1:17170161-17179206[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.8e-06 0.00039 22.2 1.5 1 23 310 333 310 333 0.97

2 9 8 1.1e+03 1.9 4.5 2 23 341 362 340 362 0.94

3 9 0.0079 1.1 11.3 5.6 2 23 394 415 394 415 0.98

4 9 0.00021 0.029 16.3 0.5 1 23 419 442 419 442 0.97

5 9 0.28 39 6.5 0.5 2 20 456 474 455 476 0.92

6 9 0.00045 0.062 15.3 1.0 2 23 513 535 512 535 0.91

7 9 1.3 1.7e+02 4.4 0.1 1 23 548 569 548 571 0.81

8 9 6.3e-05 0.0086 18.0 3.0 1 23 575 597 575 597 0.99

9 9 0.00013 0.017 17.0 6.6 1 23 603 626 603 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.8e-06	0.00039	22.2	1.5	1	23	310	333	310	333	0.97
2	9	8	1.1e+03	1.9	4.5	2	23	341	362	340	362	0.94
3	9	0.0079	1.1	11.3	5.6	2	23	394	415	394	415	0.98
4	9	0.00021	0.029	16.3	0.5	1	23	419	442	419	442	0.97
5	9	0.28	39	6.5	0.5	2	20	456	474	455	476	0.92
6	9	0.00045	0.062	15.3	1.0	2	23	513	535	512	535	0.91
7	9	1.3	1.7e+02	4.4	0.1	1	23	548	569	548	571	0.81
8	9	6.3e-05	0.0086	18.0	3.0	1	23	575	597	575	597	0.99
9	9	0.00013	0.017	17.0	6.6	1	23	603	626	603	626	0.98

Sequence Information

Coding Sequence: ATGTCTGATCTaaaagtttgccgtatatgtcTGTGCAAAGGCGTAAAACTATATCATTGGGacagttttcatttaaaacaatattatgagGAAATTATGGCCAAAAAAATAAATGAAAAAGATGGCTTACCCAACTATTTCTGCTATGAGTGTGCAGCAATACTGTACAAGTTTCATAAATTCAAAGAGAAATGCTGGATGGGTGAGAATTCTCTCCAGGAATTGCTTTGGAGTGGCCCTATCACCTTATCATCAATTTCCCAAATATACCGACATGACAGAAATCTACAATCACCACTAGGAATTATATCAGTTAATATCAGCAATAGAGTTAGAACACAACTTGTAAAACATAAAACACAGGCAAATAATCAGCCAGAAGAAACAAAAAACGatgaaataatagaaaataaaataggcTATGAAAGTGATAACTCTTTGGATGATAAAAATCTAGCAGAAATTAAGAATGAAATAACTAATGTAAATGACTGTAAAGGAGATGAAAAGACAAATATTGAAGTTATTTCTGGAGAAAAAGCAATGCCTGATGTAGAAGATGGCAGAAACTTTAGTGATAATGAAGATTTATGGCCAGAAAGTACTGATGATGCTGCTAAAACAGACATTAAAGAAGAAATCAACAATGAAATTACTGTTACAGAACAAAGTAACTTAATTACTGAACACGCAAACAGTGGCAATGAAACAGTACTTGATAACAATCacaaaagaaagaagaaaaaaaaagaaacaagtaAAGATTCATTACACAAGAAGAAGGCTAAAAAATACGAAGTTGTAGTAGGCACTGTAAAAAGTAATTACTTAGATCCAAAACATTGGTTGAAGATCAATTTGTCAGAAGACGAAGCCATGGAAGAGTTTAAAGCAAAAGCTCAAGACCGAAAGTACCTGGTAGCTACTTATAAATGTTCAGATTGTTATAAAGTCTTCTCTAAAGAGGATATGTTGAACAGGCATATTAAGTTAAGGCACAATGAGTCTCTAGGCCCGATAGAGTGCCGCTTCTGCAAAATGCGTTTCAAATGGAAATGTTTCCTATCGCGGCATATAACACAACACTTTACGAAGTTCAAATGCTTGAGATGCGATCTAATGTGTCCCTTAGAGACTACAGCTCTATTTCATAACGAATATCACAACGGAGTAATAAGAAAATGCACACATTGTGGAGACGAATTCAGACACCTATCGACATACTACACACACTTACGCACACATCGCAGCGAGCATGTGTGTACGTTGTGCGGCGCGTCGTTCGTCAGTACCGCAGGACTCAACATGCATAAAAGGACCATGCATGTTAATACTGTTGTTACTCCTGAAGAAGATTCGAACACATACTGCAATCGATGCGACATCAAGTTCGAGACGCTGAAGGCTTATGAAGAACATGTATTCCATTCGGCTAAGCATGCTGAAGGCGTTGAGGACTTGGTTTCCGAGATTCCAGCAGCATCATTGCCGAAGCGGAGGAAGAACATTCTCAGAAGAACTGAACGGAAGATCACTTCTTGTCCAATTTGCAACAAAAATTTCCCAAGTCAGACGGCCTATATGAAACATCACACAGCGGAACACAAGGGTAATCCTCTACCTTCCAAAGAAGAGGAGAGACACATTTGCGAGATTTGTGGAACATCACTAGCGGCTGGCAGCATTGCAAGTCATCTAAACACCCACACTCGAGAGAAAATTTACACTTGCTCGACGTGTAGCATGCAATTCAACAGTAAAAGCAGTATGACGAGACATCAACtgACTCACACTGGGGAAAAACCTTATAAATGCTCGATGTGCGAAAAACACTTCACTCAGAAATCCAGTATGAAGCTACACTTTCGAACCTTCCATCTCAAGGAACCCTATCCTAAAAGAAACAGAAGAAAAAATGCCGATATCCAGCAGGAAATAGAAGATTTCAGAATCAATGAAGAAGATTCAGAGGGAAACCAGAAAGttaatagatggcgctag
Protein Sequence: MSDLKVCRICLCKGVKLYHWDSFHLKQYYEEIMAKKINEKDGLPNYFCYECAAILYKFHKFKEKCWMGENSLQELLWSGPITLSSISQIYRHDRNLQSPLGIISVNISNRVRTQLVKHKTQANNQPEETKNDEIIENKIGYESDNSLDDKNLAEIKNEITNVNDCKGDEKTNIEVISGEKAMPDVEDGRNFSDNEDLWPESTDDAAKTDIKEEINNEITVTEQSNLITEHANSGNETVLDNNHKRKKKKKETSKDSLHKKKAKKYEVVVGTVKSNYLDPKHWLKINLSEDEAMEEFKAKAQDRKYLVATYKCSDCYKVFSKEDMLNRHIKLRHNESLGPIECRFCKMRFKWKCFLSRHITQHFTKFKCLRCDLMCPLETTALFHNEYHNGVIRKCTHCGDEFRHLSTYYTHLRTHRSEHVCTLCGASFVSTAGLNMHKRTMHVNTVVTPEEDSNTYCNRCDIKFETLKAYEEHVFHSAKHAEGVEDLVSEIPAASLPKRRKNILRRTERKITSCPICNKNFPSQTAYMKHHTAEHKGNPLPSKEEERHICEICGTSLAAGSIASHLNTHTREKIYTCSTCSMQFNSKSSMTRHQLTHTGEKPYKCSMCEKHFTQKSSMKLHFRTFHLKEPYPKRNRRKNADIQQEIEDFRINEEDSEGNQKVNRWR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043996;
90% Identity: -
80% Identity: -