Basic Information

Insect: Agrotis exclamationis
Gene Symbol: -
Assembly: GCA_950005045.1
Location: OX465445.1:6603090-6622429[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0014 0.19 13.7 1.0 1 23 533 555 533 555 0.98

2 10 0.077 11 8.2 0.5 2 23 563 585 562 585 0.96

3 10 0.7 95 5.2 0.5 1 23 589 611 589 611 0.95

4 10 0.00079 0.11 14.5 1.4 1 23 616 639 616 639 0.97

5 10 0.0038 0.52 12.3 0.2 1 23 643 666 643 666 0.96

6 10 1.4 2e+02 4.2 0.5 2 21 680 699 680 704 0.93

7 10 8.6 1.2e+03 1.8 0.1 3 23 753 774 751 774 0.90

8 10 0.19 26 7.0 4.2 1 20 789 808 789 811 0.87

9 10 1.3e-06 0.00018 23.2 2.8 1 23 817 839 817 839 0.98

10 10 6.6e-07 9.1e-05 24.2 1.1 1 20 846 865 846 867 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0014	0.19	13.7	1.0	1	23	533	555	533	555	0.98
2	10	0.077	11	8.2	0.5	2	23	563	585	562	585	0.96
3	10	0.7	95	5.2	0.5	1	23	589	611	589	611	0.95
4	10	0.00079	0.11	14.5	1.4	1	23	616	639	616	639	0.97
5	10	0.0038	0.52	12.3	0.2	1	23	643	666	643	666	0.96
6	10	1.4	2e+02	4.2	0.5	2	21	680	699	680	704	0.93
7	10	8.6	1.2e+03	1.8	0.1	3	23	753	774	751	774	0.90
8	10	0.19	26	7.0	4.2	1	20	789	808	789	811	0.87
9	10	1.3e-06	0.00018	23.2	2.8	1	23	817	839	817	839	0.98
10	10	6.6e-07	9.1e-05	24.2	1.1	1	20	846	865	846	867	0.95

Sequence Information

Coding Sequence: ATGGCTAACAACAGTGATGAGTGTCTAACTGTGTTCTATCAGAACGTGCGGGGATTGCGAACAAAAACAGATTCATTTTATCGTCAGGTACTATTAAATTCGTACGATGTCATTGTTTTTACGGAGACGTGGTTAATGGATGGCGTGTTTAACTCAGAGTTGTTTGATGACCGATACTTGGTGTGGCGTCGTGACCGGGACTACACAACAACTGGGCAAACCAGGGGTGGTGGCGTACTCATCGCGACACttttgggtGACTTTAATATGAGTGGAATAACGTGGGCCACATCCAATAATCATTCGCTAGTCCCAGTAAACCCCACTACTAGTGACGAATGTATGCTGGCGGACGAGTTGTGTACGCTGGACTTTGGTCAGTATAACGGGGTCGTTAATAGGTTCCCAAAAGACCCAGAGCTGTGTAACGCTTGGATGGAATCCCTGCGCATACCAAAGTTTGGAGCATATTACAGAAGAATGATCTGTTCCAACCATTTTAGAGATGATGACTACTATTTAACTAAGCAAGGAAAACGGAAGCTTAAACTTGGTGCTGTACCTTATCTTGagaCGTGCAAGATATGCCTAACATTGGATGCCAAGATGTACcaattaaaaaatggtttggaGAAAAAGTATCAAGATGTTATGGGAATCGAGccAAGAGCAGACCACCTGAATAGACTGCCAATGGCGATATGCTGGGAATGTACCGCAAGACTGCATTCAGCCGCTTCATTCAAATCTAAAGCGCTTTACTGCGATGAATTGCTGCATGATCATCTCTTGACTAATGCCGATCTAAAAATCCTTCACGTACAAAGAATCCACCAAGGGAAAACTCACTTAAAATCTTCCATAGCTGTCCAGCAAGTGTTCAAATTTAATAGCCATGACAATGAAGACCATGCCCCAAACACTTTTATAAAAGCTGAAATAATCGGTATTCCAAATAATGAAGAAACTGAAGTAGAATTACAAAACTTAGTTACAGATAAAATGACGATAAAAGATGAAAGAAATAGTAGTATAATTGTCGCTAATTTTCCATCTACTGAATTTAAAACTGAAGTTGATTTACTACCACCGCCAATAAGTGAAGTTGAAATAGGTGATGATACGAACTTCGATGATTACAATGACGATGGTGATTATGAAACGGTTACAGAAAATATTTACATAGAAAATACTAACCCAGATTCTGCTAATGTCTCTACGaatcaagaaaaaattaaaactgataACGATGCAATGGATATCTCTCAAATTATGGACACTAATGATGAAGAATTTATGAAAATGGCTAGGAATTTGAAAAGTGTTGAAGATAAACCTGGTGATTCTGACCATGAAGGCATACCAAGTCAACTCAAGGATAAAACTGTAATGTGTGTAAAGAAGAGAAAGAAGATAAAAATAGATGATGGAGTTATTGTTTGCGTGAAAGGAAGGGGACCAAGGAAACAGAGCACGTATGTAAAACCGAGCATGCCAATAGACGAGAACATATTTTCAATGCATCCACTGGACCCTGATGATTTAAGAAAAGAAATACTCGCGAGAAGAGATAGTGCTCATTATAAGAATTCGCCATTCAAGTGTGAAATCTGCTACAAAGGATTTCCTACCAAGGAAAAGAGAGAAAACCATGTGCTGAAACATAGCGAGaaatatgGTCCGATAAAATGCAACATTTGTCTTGTTCGAATGAGGAGAAACAGAGACTTGCGCGCGCATGTTAATAGACAACATACCATGGAGTTTATATGTAAACTATGCCCCATGAAAACAAGGAACCGAAACGTGGCACAAGGACACATGAACTACCATAATGGTAGCAAGTACAATTGTCCACAATGTTCCATGGAATTTGAgaaaAAAACTACGTTACTGAATCATCAACGTCTGAAGCACATGTCAGGATTTGTGTGCGAGCTTTGTGGATACACATTCGTCAGTACACAAGGTGTCGAGGTTCACAAGAGGTTGAAGCATAAGCTATTTGATCCTAATGATACTAAATTTACAGGCCCTTACTGCGAAGTTTGCGAGGTCAAATTCTTGACAGAGAAGGCATACAACCGTCATTTGAGACTGTCGTCGAAACACATCACGGAGGATGACCCTAATCGTATGAGCAATGATCCGTCGATAAAGCAGCGACGACTGGGCAATTCAAACATGAGGAGTGTCCGACGACCCGTCATACATCGTAAGAGTGACAATGAACAAGCGAGTAATGGACCAATTATATGTGAACAGTGTGGCGTAGAGCTGGAAAATATGCGTACGTACGCGTTGCACTTCAGACAGGTGCATCCAGGCATCAACCGTACGCAGTTCAATTCGGGAACCACGCCGTATATGTGCGAGCATTGTGGCAAATTCTTCTTTAACACAACGACCCTATCATGCCACATGTGGGTCCATACCGGACAGAAGCTCTTCCAATGCGACCACTGTAACAAGACTTTCACTATCAAATCGAACCTCGCGGGTCACATGCGACAACACGACGGCACGCGACGGTATTTCACCTGTAATATCTGCGGCAAACAGTTCACTTTCAGTTATAACCTCACCAGGCATATGTTTGTAAGTATTTGCTCTGTATTTCCCGAAATCTatatcttcaagtcaagagttaaaaaaaaaaacttaaaaaaaagggaaccgactttaaaaccaaacacaaaaaaaagtgtaaaataa
Protein Sequence: MANNSDECLTVFYQNVRGLRTKTDSFYRQVLLNSYDVIVFTETWLMDGVFNSELFDDRYLVWRRDRDYTTTGQTRGGGVLIATLLGDFNMSGITWATSNNHSLVPVNPTTSDECMLADELCTLDFGQYNGVVNRFPKDPELCNAWMESLRIPKFGAYYRRMICSNHFRDDDYYLTKQGKRKLKLGAVPYLETCKICLTLDAKMYQLKNGLEKKYQDVMGIEPRADHLNRLPMAICWECTARLHSAASFKSKALYCDELLHDHLLTNADLKILHVQRIHQGKTHLKSSIAVQQVFKFNSHDNEDHAPNTFIKAEIIGIPNNEETEVELQNLVTDKMTIKDERNSSIIVANFPSTEFKTEVDLLPPPISEVEIGDDTNFDDYNDDGDYETVTENIYIENTNPDSANVSTNQEKIKTDNDAMDISQIMDTNDEEFMKMARNLKSVEDKPGDSDHEGIPSQLKDKTVMCVKKRKKIKIDDGVIVCVKGRGPRKQSTYVKPSMPIDENIFSMHPLDPDDLRKEILARRDSAHYKNSPFKCEICYKGFPTKEKRENHVLKHSEKYGPIKCNICLVRMRRNRDLRAHVNRQHTMEFICKLCPMKTRNRNVAQGHMNYHNGSKYNCPQCSMEFEKKTTLLNHQRLKHMSGFVCELCGYTFVSTQGVEVHKRLKHKLFDPNDTKFTGPYCEVCEVKFLTEKAYNRHLRLSSKHITEDDPNRMSNDPSIKQRRLGNSNMRSVRRPVIHRKSDNEQASNGPIICEQCGVELENMRTYALHFRQVHPGINRTQFNSGTTPYMCEHCGKFFFNTTTLSCHMWVHTGQKLFQCDHCNKTFTIKSNLAGHMRQHDGTRRYFTCNICGKQFTFSYNLTRHMFVSICSVFPEIYIFKSRVKKKNLKKREPTLKPNTKKSVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00042707;
90% Identity: iTF_00040945;
80% Identity: iTF_00040945;