Aexc013870.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465420.1:24119243-24130568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.092 13 8.0 2.0 1 23 331 353 331 353 0.98 2 11 0.42 57 5.9 1.8 1 23 360 382 360 382 0.90 3 11 0.52 72 5.6 0.6 1 23 386 409 386 409 0.97 4 11 0.041 5.6 9.1 3.3 1 23 414 437 414 437 0.94 5 11 8e-07 0.00011 23.9 1.9 2 23 442 463 441 463 0.96 6 11 0.0085 1.2 11.2 1.3 2 23 469 489 468 489 0.97 7 11 0.00081 0.11 14.5 1.7 3 22 499 518 498 522 0.92 8 11 0.0076 1 11.4 0.8 2 20 531 548 530 550 0.93 9 11 0.0046 0.62 12.1 0.6 1 23 556 579 556 579 0.96 10 11 3.4e-06 0.00046 21.9 0.5 3 23 591 611 590 611 0.97 11 11 0.019 2.6 10.1 0.5 5 23 620 639 617 639 0.94
Sequence Information
- Coding Sequence
- ATGGCAAAGGAACGCGCTGCATTACAGGAACTGTTGTCTACAATGACGTTAGGACAGTTGCTACCACATCCACTAAGTCATATGCTCGAGCTAGCGCCTGAACTAACGGCTAGTGAGGCCTCTTCCCAGTACGTCATGTGCTGGGAGTGTGAGTTTACAATTGTCAAAATTAGGCGATTTCAGACCAGACTAGGAAAGGCACACCAGATCAGAATTAAGATGGAAATACAAGGTGCTAAGACTGTGGTCAAAGGATTATCAAGCTTAATAAAAACAGGAGTAGAAACAATGAATTTAATACCATCGGCACCAGAAATTGTACCAAGCAATCGGAAACAACCCAGTCCTAACCCATCTTCTATGTGTAAGATAGAACCGGTAACCATTAAGATTGAGATTGATGACACAGATAAATATTGTAGTGATGACAATAGTGAAATGATGCCCTCGAAAATGCAGCAAGAGTCCAGTGATGAGACTGATACGGCTAGTGAAATCGACATGAATGACGATCCACTAAAGACACCAAAGCCGAAAAAGACAAAACTTATAATGAAATGTGAAAGAATAGATATGCCTGCACAAAATGCGGTAAATGATGCAACAATTGTTATACCCACACCAAATGTTATACCCAGACCTCAAATAGTCACTGTGGACGTGCCAAAAGAAAACGTAACTGTCAAAGGGCGCAGAGAACCAGTAAAAGTTACTCGTGGAATTTCAAataaagaaagagaaagaaaaaatgTCCCTACTGTAGTGAAAAGTAAAGGACGAAGTGCCCCGAATCCAGTAAAAGGTAAAGGAATTGTTAAAACACTTTCAAAATGCGAAGAAGTGACTTTAAAACCACCAACTGAACCTTCAGACTTGGGCATGGATGGTTTTGAAGAATATGATGAAgtgaaatgtttaattttaaacaaatctGAATTGGCTAAATTTAGGGATGCACAGAGGTTAAAGCAGGGGTACAAAGGATGTGCTTTTAAATGTGACTCATGTATTGAAAAATTCAATAGTCAAAAGAATTTGGATGAACATAATAAGAAACATGTTTTGGCACGCGGCAGTCATATTTGCGAAGTGTGCCAACAGAGGTTTTATGATAAAAGTGTTCGAGATGATCATTACAAGCTACATTTTGTgGTGTATCAATGCCTGCAATGCCCATATCAGAGCAATGACCGATTAAAAATATCTGAGCACATTAGAAGGAATCATGAGGTCTCTGTGTTCGAGTGCAAGAAATGTAATATATATTTCAAAACATTCAAAGAGAAGCGTAGACATAGAGTGTCTGTCCATGCTAAGCGACAACCTTGCGAAGAATGTAACAAAACGTTTTGTAATCGGAGTCAGTTGACAACGCACATGGCtatACATCAAAGAGAAACGACAGAATGTCCTACATGTAAGAAgaagatcagaaataattatttagaaacACACATGAAATCACATGAAGACACTACCGAGGAAGGCGCTTATTGTGTGGATTGTGAAAAAACCTTTAAGACTCTGAAAAGTTACCAATCTCATCTCAAAACTAGTCTTAAGCATAATACGGTTGAAAAAGTTCGCATTAAATGTGATCATTGTGACAAATACTTCTCTGCGGCCGGCTTGAAGCATCACCAAGAAGAAATCAGAGGAATTAAATATACTTGTGATATTTGTAAGAAGgatagtaaaaataaaataattctggAAAGACACATACGCTTCGTCCACAAAGGACAGAAGCCGCAGCCCAAACCCAGAATCTGTGAATATTGCGGAAAATCTTTTACTaTTAAAAAATCTCTACAGGAACATATAAACAGCCATTTAGGCAATCGACCCCATGTTTGCGATTGTGGAGCGACATTCGTGTATTCAGGATCTTTATATACACATCGAAGACTTGTGCACAAAGTAAAGAGAAAATATGAAATGActaattaa
- Protein Sequence
- MAKERAALQELLSTMTLGQLLPHPLSHMLELAPELTASEASSQYVMCWECEFTIVKIRRFQTRLGKAHQIRIKMEIQGAKTVVKGLSSLIKTGVETMNLIPSAPEIVPSNRKQPSPNPSSMCKIEPVTIKIEIDDTDKYCSDDNSEMMPSKMQQESSDETDTASEIDMNDDPLKTPKPKKTKLIMKCERIDMPAQNAVNDATIVIPTPNVIPRPQIVTVDVPKENVTVKGRREPVKVTRGISNKERERKNVPTVVKSKGRSAPNPVKGKGIVKTLSKCEEVTLKPPTEPSDLGMDGFEEYDEVKCLILNKSELAKFRDAQRLKQGYKGCAFKCDSCIEKFNSQKNLDEHNKKHVLARGSHICEVCQQRFYDKSVRDDHYKLHFVVYQCLQCPYQSNDRLKISEHIRRNHEVSVFECKKCNIYFKTFKEKRRHRVSVHAKRQPCEECNKTFCNRSQLTTHMAIHQRETTECPTCKKKIRNNYLETHMKSHEDTTEEGAYCVDCEKTFKTLKSYQSHLKTSLKHNTVEKVRIKCDHCDKYFSAAGLKHHQEEIRGIKYTCDICKKDSKNKIILERHIRFVHKGQKPQPKPRICEYCGKSFTIKKSLQEHINSHLGNRPHVCDCGATFVYSGSLYTHRRLVHKVKRKYEMTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00040198;
- 90% Identity
- iTF_00040198;
- 80% Identity
- -