Aexc039076.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465439.1:7514755-7534359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00039 0.054 15.4 1.5 1 23 270 292 270 292 0.98 2 13 0.098 13 7.9 3.8 1 23 300 323 300 323 0.93 3 13 0.92 1.3e+02 4.8 0.4 1 23 327 350 327 350 0.90 4 13 0.0019 0.26 13.3 3.1 1 23 425 447 425 447 0.99 5 13 0.00013 0.018 17.0 2.7 2 23 456 478 455 478 0.96 6 13 2.2 3e+02 3.6 6.7 1 23 482 504 482 504 0.98 7 13 0.00054 0.074 15.0 2.2 1 23 509 532 509 532 0.98 8 13 1.5 2.1e+02 4.2 3.9 3 23 538 559 536 559 0.86 9 13 0.49 67 5.7 0.1 1 20 578 597 578 599 0.94 10 13 0.055 7.5 8.7 0.2 2 23 645 667 644 667 0.94 11 13 3e-06 0.0004 22.1 0.9 1 23 676 698 676 698 0.98 12 13 0.0017 0.23 13.5 0.8 3 23 706 726 704 726 0.96 13 13 5.7e-06 0.00078 21.2 2.6 1 23 732 755 732 755 0.98
Sequence Information
- Coding Sequence
- ATGTACAATCTGAAAGCGTGTATGGTGTGTTTCAGCACAGATGTTAAATTATTTAGTATGAACAGTGGCAAATTACGACatgaattttatttgatttctgGTATTCAGACTTCTTACGGAGATGGTATGCCAGattatttatgttttcaatGTGCAGCTGTTGTTCGAAATTTCAAAAGATTTCGCGATAAATGCCACCGAGCTCATTATGCTTTGAAAGAAATTTTAAGCAGAAACAAAGAGATTAGCAAAACAAACCTTGAAGATATAAACCGCAACCTTCTTGGTATCCAGCCGCCTCTATCATTCATGAGCTTAGATAAAACTCACTATGAAAAAGTAACTTTCCAATGGAAGAAACAGAACCGTATAGACCGTTTTAATTCTCCCAAACAAAACATGACTATACTTCATTGTAGTACACTCTCTTCTGATTTCACCTTTGAAGGAATAACAAATCCTATGGAATTAGAATTTACTGAGGAAAAAATTAAAACGGATGTTGACGAAAAAGAAACAGATATTGTAGAATTACCCATTGAGTATGGAATAACCAAAGATGAGTCCAATGGCTTTGCATGCGCTGCAACGGAAGACTCGGAACTACCAGATTCATTCCTTGAAAATGATAACTTTGATAGTGATCAAGATATTGATAAATTCCCTGAATTGTCACTGACACTTAATACTGAGAACCCAGTTGTAGATGGGACTGAAATGGATGAAGAATATGCTACATTGATCCCAATTTCCGTGAAAGAAGCTAAAGCTGCAATTGAAGTGTACAAAATGTTCACACAGGGTAAATACCATTGTGAGATTTGTAATAAAGCTTATAACAATGAGGAACGAATGAAGATACATCTAAGGATGCATGATAAGcatgTGAGTGGCACCTACCACTGTGGACTCTGCCAGTACTACTATAAAACTGAGTTTTTACTTAAAACTCATATGACTGACAAACATCTGTTTAAGTATCTGTGTAGAAAATGTCCTGAAGTCAGTTTTGATAGATCATCAGCAAAACAGCACTACATCTGGACTCACTTACAAAACGGTAGCAAAAAGAACGCTAATTGGTACGAATCACGACCAAAATGGTTGCAAACACGCGGAGGGAAGCGTGTCAAAGGAGTTGTGACCTTAAAACCCgttaaaaagaataataaattgCCTGATGACTTTCTTGTCTATTCTCCTATTGGTCATGAGGAACAGTATCGATTGGTTCAGGACAGACAGCAGTCGAGGAACTATCAGGAAGCAAGGTATCAATGTAATCTGTGTTATAGAGGGTTCAGAGGTATGCAGACATATAATAAACATATGAAGAAACATGATCCTGCACATTCCGGTCCCTTACAATGTGACATCTGCAAGATCCATTTCAAAGACCAGAGGAAGCTGTACAAACATATGAACATCACTCATTTGTTTAAATACTCCTGCCAGTTGTGCAGCTATGTGTGCTGTAATAGagGTCAAGCTCATATGCATTATAGATGGCATAAAAATGTGACATACGAGTGTCCCCATTGTAAGAAAGAATTCAtGAAGGCATCAACGCGACTAACTCATATAAGAATAAAGCATCCGTCCATGTGTCTGTGCACTATTTGTGGTCACAGTTTTGTTAGCGATTCGGGATTGTATTGTCACAAACAAATCGCTCATACTGAAGAGGAAATAGAAGAAAGCAACAAGATGGTGTTGAACACGGCCGACCCTCACTACTGCGCGGACTGCGAGATACAGTTCATGTCGCTCGCTGCCTTCACCACGCACCTCGGCAGCTCATACAAACATGCTACTACTAACTTGTCCATCAAGCCGTCGCGTCGCAACAAGACTGAAGAGCCTCGCGCTCGTGGCCGACCACGACGTGGCGCGTGCTCTGAGATCGTCAACAACGGACTTACCACCTCCAGCACTTGTGAAGTGTGCGGCAAGTTCCTATCAAACGACGTGCAAGCTCGCAAGCACTACGAGTCGGAACATCCGGACACCGAGTACCTCAAACGGTACATGTGTGACGTCTGCGGACATACCACCAGGCAATACGCGAACCTGATAGTCCACATGCGAACTCACACCAATGAGAAGCCGTATGGATGTCCTCACTGCGACCGACGGTTCAACATGCCCAGCAATAGAGACAGACATCTTGTTGTGCACACGGGTGAGAAGCGGTACCAATGCCAACATTGCAACCGTCGCTTCACTCAGAGCAGTGCTGTCAAACTACACATACAGACTGTCCACCTCAAGATACCTTACGCTCCTTGGAATAAGAAGAATCGGAAGCGACGCAAGGAGCTAGAGTCAGCGGGTATGTCGACACCGCTGATATTACCGCCGCCCAACAAATTAATGGCTTACGAAGCGCAACCTCCTGGAGATTACCTCAACGCTTACATCACTTATAACGACGACTAA
- Protein Sequence
- MYNLKACMVCFSTDVKLFSMNSGKLRHEFYLISGIQTSYGDGMPDYLCFQCAAVVRNFKRFRDKCHRAHYALKEILSRNKEISKTNLEDINRNLLGIQPPLSFMSLDKTHYEKVTFQWKKQNRIDRFNSPKQNMTILHCSTLSSDFTFEGITNPMELEFTEEKIKTDVDEKETDIVELPIEYGITKDESNGFACAATEDSELPDSFLENDNFDSDQDIDKFPELSLTLNTENPVVDGTEMDEEYATLIPISVKEAKAAIEVYKMFTQGKYHCEICNKAYNNEERMKIHLRMHDKHVSGTYHCGLCQYYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQNGSKKNANWYESRPKWLQTRGGKRVKGVVTLKPVKKNNKLPDDFLVYSPIGHEEQYRLVQDRQQSRNYQEARYQCNLCYRGFRGMQTYNKHMKKHDPAHSGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKKEFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEEEIEESNKMVLNTADPHYCADCEIQFMSLAAFTTHLGSSYKHATTNLSIKPSRRNKTEEPRARGRPRRGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELESAGMSTPLILPPPNKLMAYEAQPPGDYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301697;
- 90% Identity
- iTF_00043873;
- 80% Identity
- -