Aexc040728.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465441.1:3317862-3320499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.016 2.2 10.4 5.9 1 23 151 174 151 174 0.97 2 18 0.00031 0.043 15.8 0.9 1 23 183 206 183 206 0.96 3 18 0.019 2.6 10.2 0.7 2 23 219 241 219 241 0.97 4 18 0.0014 0.19 13.8 0.8 1 23 250 273 250 273 0.96 5 18 0.00033 0.046 15.7 2.9 1 23 285 308 285 309 0.96 6 18 9.6e-05 0.013 17.4 0.4 2 23 335 357 334 357 0.97 7 18 0.0015 0.2 13.6 1.2 2 23 367 389 366 389 0.96 8 18 0.14 19 7.4 1.7 3 19 395 411 393 413 0.93 9 18 0.00063 0.086 14.8 0.5 2 21 419 438 418 441 0.94 10 18 0.4 55 6.0 2.2 3 23 451 472 450 472 0.93 11 18 0.00083 0.11 14.4 3.5 1 23 477 500 477 500 0.94 12 18 0.00046 0.063 15.2 2.0 2 23 513 535 512 535 0.96 13 18 0.18 25 7.0 0.4 1 23 562 585 562 585 0.92 14 18 0.55 75 5.6 0.1 2 23 592 613 591 613 0.91 15 18 0.02 2.7 10.1 1.6 2 23 619 640 618 640 0.97 16 18 4.1 5.6e+02 2.8 0.7 3 23 648 670 646 670 0.88 17 18 0.02 2.8 10.0 0.1 1 23 706 728 706 728 0.97 18 18 0.089 12 8.0 1.9 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGGACCTAGATGTTACGATTAAAGTAGAAAAAGATGATTCAAGAAAAGATCCTACCTCATTTTTGCCCGAGGAGCCAATGTCTTatgaaattaagaaaaaaaagaaaaagaagaagaagaaaaaagagGAAGATGATCCATTTAAAGATATTGATGATAAGGTGGGAATCAAGATTGAGCCAATAACTCTGTTGGATCCGGAGGTTAAGATCAAGGTTGAGGATATTGAAGTAGAGTTGGATTTTAATGATTTCGGAGACAATGGCTTAGTTCACGACGGTGACCATGACGACAGTCAAGAGCCAGCCGTCAAAATAGAGCCCCAGAATCACGACGCCGTCCTTCTAACATTCGAGAGCGTCATCAGTGACAAACCAGTTAatgttgctgacagctctgaAATGTTCCAATTCTCCAAGAACGACATACCCATCAAACATGCCCCAACACACGTCTGCAAAGTCTGCCATCTAGTCTTTCAATCAACAAAAACTCTAAGAATGCATCAAAAGAGAAAACATAAAGTCTTCAGAAAATCCTTCAAACATATTTGTGATTATTGTGGCATGTCTTACGAGATGAAGAACAGTTTAGTTGCTCATATTAAGAGGAAACATGGACCAGATGCAAGTCCAGATGATCGAGAAGAACGGACCTGTGAAATATGTGCTTTAGTCTTCAAAGGCATGACACGGTTACGCATGCATATGAGACGGAAGCATGGCTCTTTCCAAGAATCTTTTAAACATGTTTGCGAAGACTGTGGTTTAACCTACGACAAGTACAGAAGTTTAATAGTCCATGTACAACGTAAAcattctaataataaaaaaccggaAGTCAGTCAATGGTACAACTGTCCATTCTGtcctaaaatatttacaaagagaGAAACTTATGCTAGACATGTGCAGAGAAAGCACCATGTTGCAGACGACAATATAAAACAAGAAGATAATGCTGATTTGGAGGATTGTAGGAATATTGAAACTGGTGAGATCACATGTAAAGAATGCCCTCTAGTCTTTTCGTCCATTGGTTTCTTAAAACTTCACATGAGAAGGAAGCATAATGCGTTGAGAGAAGATTTTAGGTTGAAGTGCCGGATTTGTAACTTGTCTTACGATAAAATCGAGAGTTTGAAACGGCATGTGAGGAGAAAACACGACAAAGGATCTCATTGTGAAGTTTGTAACAAACAATTTGATACGCGAGAGATGTATCTCAACCATTCTCACCTAAAAACGATAAAGGAGTGCAATATTTGTGGACTCATTTTCGCTTCGCAAGGAGGTCTGGCCAAGCATTTGCGGTGCACACACAAAATAGATTCACCGAAGACAGTCTTCTGTAATCTGTGTAACGAAGGTTTCCACGACAAACGACAGCTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTTTCCTACACTTGCAGATACtgcaaaaagatttttaaagcgAAAGAGAGTTATAGACGCCACATTTTATTTAAGCACCCAACTGCAAATCATTTTAACCCTCAGAATGCGCAGAAATGCGAACAATGCAGTGCGACTTTTAAAGACGAATTTGATCTTTGTCGTCATATAAATATAACTCACGGTCGCCCTGAAGATATGACGAATGAAGACAGAGAGATGCTAGAAATTAAAACAGAAGATCAGGATATAAAGGACCGTTTCCAATGCACCAAGTGTCCAGATACATACCTTACTTGGGAGCAGTTGAAATTGCATTACGAGGCAACACATCATAATATAGAAGAGACTCAGTGTCAAATATGTGGGGAGATACTCCCTGGAAACGAATTACAAAAGCATATAAAAAGTCAGCACACGGATACGGATATGCAATGCAAATACTGCGAGTTCAAGACTACTGTTAGAGTTAGTATGACACAACACATGTTGAGGCATAAGAACGCAGAAACAATTAACTGCGACTACACTGGTTGCAGGTATAAGACTTTTTACGAAGGTGCTATGGAGAAACACAAAAGGAAACATGCCGATCTTGGAGTTAAACTCCAATGTACGCAGTGTCCGTTCCAATCAATGAACAAATACATCTTAAAATACCATGAAGAAGCTCACGAAACTGGTAAAAAGCGATATATGTGTGATCAATGCGATTATGCAACGATTTTACCAGCAAATCTTGTACAGCATAAATATAAGCATTCTACGGAGAAGCGATTCAAATGTGAGGTGTGTCCGTTTGCAACGAAGTATAATACTTCACTCAGGTTCCATGTTAGGAAAAAACACTGTGATCTACCGACATTCAGTTAa
- Protein Sequence
- MDLDVTIKVEKDDSRKDPTSFLPEEPMSYEIKKKKKKKKKKKEEDDPFKDIDDKVGIKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLVHDGDHDDSQEPAVKIEPQNHDAVLLTFESVISDKPVNVADSSEMFQFSKNDIPIKHAPTHVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPDASPDDREERTCEICALVFKGMTRLRMHMRRKHGSFQESFKHVCEDCGLTYDKYRSLIVHVQRKHSNNKKPEVSQWYNCPFCPKIFTKRETYARHVQRKHHVADDNIKQEDNADLEDCRNIETGEITCKECPLVFSSIGFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHLKTIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHILFKHPTANHFNPQNAQKCEQCSATFKDEFDLCRHINITHGRPEDMTNEDREMLEIKTEDQDIKDRFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKSQHTDTDMQCKYCEFKTTVRVSMTQHMLRHKNAETINCDYTGCRYKTFYEGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00042908;
- 80% Identity
- -