Aexc045843.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465446.1:4688742-4702091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.4 3.2e+02 3.6 0.4 1 23 407 430 407 430 0.89 2 23 0.69 94 5.2 0.4 2 23 456 478 455 478 0.96 3 23 0.042 5.8 9.1 0.7 2 23 501 522 500 522 0.96 4 23 0.0086 1.2 11.2 1.7 1 23 526 548 526 548 0.96 5 23 0.003 0.41 12.7 1.3 1 23 553 576 553 576 0.96 6 23 0.062 8.5 8.5 0.6 2 23 584 606 584 606 0.91 7 23 0.0036 0.49 12.4 5.2 1 23 613 636 613 636 0.97 8 23 0.0009 0.12 14.3 2.4 1 23 642 664 642 664 0.97 9 23 0.00019 0.026 16.4 3.4 1 23 670 692 670 692 0.98 10 23 8.2e-05 0.011 17.6 0.7 1 21 698 718 698 719 0.97 11 23 0.013 1.8 10.6 0.4 1 23 793 816 793 816 0.97 12 23 0.13 18 7.5 0.0 2 23 842 864 841 864 0.96 13 23 0.05 6.9 8.8 1.2 2 23 887 908 886 908 0.96 14 23 0.00018 0.024 16.5 3.6 1 23 912 934 912 934 0.97 15 23 0.0083 1.1 11.3 0.3 1 23 939 962 939 962 0.97 16 23 5.2 7.1e+02 2.5 0.3 2 12 970 980 970 992 0.81 17 23 0.23 31 6.7 0.3 1 23 1037 1063 1037 1063 0.87 18 23 0.012 1.7 10.8 0.6 2 23 1135 1156 1134 1156 0.96 19 23 0.92 1.3e+02 4.8 0.3 1 23 1160 1182 1160 1182 0.97 20 23 0.081 11 8.2 1.6 1 21 1187 1207 1187 1210 0.89 21 23 0.092 13 8.0 0.8 2 23 1247 1269 1246 1269 0.96 22 23 2.2e-05 0.0029 19.4 1.2 1 23 1275 1297 1275 1297 0.98 23 23 1.7e-05 0.0023 19.8 3.0 1 23 1303 1325 1303 1325 0.98
Sequence Information
- Coding Sequence
- ATGTCGGCGGAAAAAATTGAGATAGAGACGTTTTTCGGGAAATGTAGGTGTTGTCTTTCCTATGGCTACTTAAAAAACATGTGGACGGAACATCATTTCGAAGGAGAACCTGAAATCTACGGCGAAATGCTTGTCCAATGTTTTGCTATGGCTTGGGACGTCAACGAGGACTCAATGGAACAGGATCAGATATGCGAGCAGTGCATTAGGCGGTTACGGGATGCCCACGACTTTAAGAAGATCATCCTGGACTCACAAGAGCAGTTGGTTCAAAAAATTGATGAAGACAACAAAAACATCATCaaagaagaaataataatagaagagGACTTCTTAGAAGAACACAGTGATATGGGTGAAGACACTGCGGACACCATGAACGATGACATAGAATACACTATGGACACCGCTGACTCTCCAAGTGTCAAAGATGAGACGGAGTATGAAGAGATTGAGTATTTAGAGGACGAAGACAATGGGGGAGTGAATCAGACAGTTGATACTGACTCCTCACATGCCACAGATCCATGGAAACAAGCTAGAAGAAGAAAACGGCCTCGAGAACTAATCCCAGAAGGTGACGGTGACACGTCAAAGCGCAAATGGCCGAAGAAGCTACCCAAATCGGAACGCCTCAAGACGTACAAACAATATTCTGAAGTTGATTTCAGGAAATGTATTGAAGAGATCAAAAATAATGTGATGACTATTTCTGAAGCGTCTTTGAAGTATGATATACCGAAGAAGACTATTAGTGCCAAAATCAGAAGGGAAGGCCAAAATGTCCTGATTGACAATACAACGAAATCCAAATTGGAACGATCTAAAAAGAAACTGAGGAAAAAACCCACCATCTTTAAAGCCAAAGCGTCATTTTTGGatggaaaaactaaaaaactaatagagCTGAATAAATTAAAAGCAAAACGTTTGAAAAATGAGATTGTTGTAGCTATAAAAGATGATGATATAAATAAAGAAGCAAACGTTATCCCCATAGAGTTTGATATTGAACCTAAAATAGAAGAGATGGAGGAACCTGTGAATGCGGACCAAGTCAGGACCCGATACAAGGCAATAGTTAATGACAAATTCAAGAAAGGAAACAGAGAGACTGAAAAAATCGAAATTAACGAAATTAACAAACATAAAGATAATATAAGCATTATATTACAAAATTCTAACGCAACTGTCATCAAAGGATTTTGGGGAACTGGTTATTCTTGCAACTTTTGCCAAGAACAGAGAGAAATACCATCAGAATTAAAACAACACAACTTGGAAACTCACAATAATGTGACAGACGAAGTCGTCAAAGTAAAATACGTATCAGATTTAGTTATAAGACTAGACATTACAGATCTCAAATGCAAACTATGCAACGCAGATATGAACTCTTTGGAAGAATTTACGGAACATCTAAGAAAAATACATTCCAAAATCCTACACACGGATATTAAGAACCATATAATTCCTTTCAAATTCAATACAGATAACTTACAATGCGTCATGTGTGCGAAACAGTTTAAATATTTCAAGCTGCTTTCGGAACATATGAGCGAGCATTACCGGAACTACGAATGCTCGTTTTGCGAGCGTGCCTTTATAAATAAGCAATCAATGCAAACACATAGTTATAGACATAACAAAGGAGTTTTCAAATGCTCACATTGCCCGAAAGTTTTTGACTCGAGACCGAAGAGAAGCGTGCATGAGAGAGTAGTGCATGCTCTTTCTAATAAAACACGAAAATGCTCGTTTTGTAGCGAAAGATTCGCGACTAAAGACTTAGTACAAAGCCATGAGGTAAAAGTTCACGGTGTAAAACCTACTGTGTTCTCTTGCCAAGCTTGCAATAAATCTTACCATAGCCAAAGCTCGCTCACAACTCATAGAAAGCGTTACCATTTAATGTTAAGACCTCACAAATGCTCCTACTGCGACATGGCATTTTTCTCCAAAATTGAATTGCGTTCCCATACGGTGACTCATACAAAATCAAGGGATTTTAAGTGTGATATGTGTACAAAGTCTTTTGGGACGCGATGTAGTTTAAATCAACATGTTAGGGGACATTTGGATGATAGACGGTTCAAATGCGATGATTGTGAACGGACGTTTGTCCATAGGACTGCCTGGAAAGTACATATGAGGAATGCACAACGGGATAAAAAGGCTACAGAGATAGACAAGCACAAAGATCTGACCAACGTTCCCAAAACTTTAAGGATCAGAGTCACAACGCAGGCCGAAGATGACAATGATATGTCCAGTGTACAGAAAAACAAGAATCTTGTAGCGAATTTCAAAACGACCGTTCGTTCTATATTGGAATGCACGAATGCAACTCCAATCAGGGGTTACTGGGGCATAGGATATGCGTGCACTTACTGCAGTTACCAATCTGCGTCAACGTCAGAACTAAAGCTCCACACATTAACCGCTCATGCCAAAAATGAAAACGAACTTGACAACTTGAAATACGTCGCGGATATGATCATTAAGCTAGATGTCACGGCTCTCAAATGCAAGATATGCAACATAGAAATAGATTCTCTTTCCGAAATCATGAATCATATCAAAGTAATTCATCGAAAACCAATCCATTTAGGCATCTCCAATCATATCGTGCCCTTTAACTTCGGAAAGGAAGGTTTAACTTGCGCTATTTGCCTCGAACAGTTTAATTATTTCAAGCATTTATCCGAACATATGAACGAGCATTTTCCAAACTATGCGTGCAATGAATGCAGTAGATGTTTCATCAACAAACGTTCTCTAAGAACTCATACAATCAGACATATGACAGGGACGTTTGTATGCGCGTTTTGCCCCAAAATTTTCGACACCagaatcaaaatgaaagaacacGAAAGAGTTTTACACCTAAAAGGATCTAAGACTCGTAAATGTGGGTACTGTGATGAAAAATTCATGGATGCCTTAAGAAAAACTGAACACGAAGTGAAGGAGCATGGGGCTCCCGTTCGCAAATACGCTTGCGGCAATCCAGACCCCAACCGTGAAAAGATGTACAAACTCATTAGGGAAATCAAAGCGATACTAACATTCACGAACGCTACCCCATACAAATCGAAACATGTCAGGTACTACTGTGCTTATTGTTCAACGGATGGACCTCACTTTGAAGACCCGGACGATCTCCGGACCCATACCCGGGTAGAACACGTGGCACATAGAACGGAAAAGATCGAATACGCCATGAGACCTTATTGGGTGAACGAAGTTCTCAAAGTTGATATAGAAAACCTCCTTTGTACCGTTTGCTGCATTGTAATAGGCAGTTGGAATGAAATGTTTAAACATTTGATAGAGAAACATAATGTAGTCTTAGATCAGGCTTACACGAGGGTCAttccttatattttaaaaccaaatttACAATGCGCGTTGTGCAAAGAATCTTTCTCTAACTACCTACATTTAGACGGACATATGAACGCGCATTATAATAACTATGTCTGCGATGATTGTGCAGACACGTTTCTTTCCCAAAACCGTTTAAAACAACATGTTAAAATACACAATATTGGCAAATACGAATGCAGATTTTGCGATAAAGTTTTTGCCCTTagcaaatatagaaaaaaacacGAAGAATTCATACATGAGCAAGTTTCAAAATTCAAGTGCATATACTGCCCAGAAAGATTCACCGGAGAGTATTTACGTCATAAGCATTGTCTTGAAAATCATCCTGAGAAAATCAAAACTATAACTTGCGAATACTGCGGGGACACGTTTACTTGGAGGCAGTACTATTTGAATCATATTCGCAAAAAACATGAGAacagaaaagtttttgaatgtCCGAAATGCAATAAGAAATTCTACGGGAATTATGAGCTGAAAGAGCATTTGTTGAGACATGTGGGTGTTAAGAATTTTGAGTGTACTATTTGCCATAAGAAGTATATTTCTCCGAATTCGTTGAAGAACCATATGAAACAGCATCGTAAGAAAAATGAGGCGTGA
- Protein Sequence
- MSAEKIEIETFFGKCRCCLSYGYLKNMWTEHHFEGEPEIYGEMLVQCFAMAWDVNEDSMEQDQICEQCIRRLRDAHDFKKIILDSQEQLVQKIDEDNKNIIKEEIIIEEDFLEEHSDMGEDTADTMNDDIEYTMDTADSPSVKDETEYEEIEYLEDEDNGGVNQTVDTDSSHATDPWKQARRRKRPRELIPEGDGDTSKRKWPKKLPKSERLKTYKQYSEVDFRKCIEEIKNNVMTISEASLKYDIPKKTISAKIRREGQNVLIDNTTKSKLERSKKKLRKKPTIFKAKASFLDGKTKKLIELNKLKAKRLKNEIVVAIKDDDINKEANVIPIEFDIEPKIEEMEEPVNADQVRTRYKAIVNDKFKKGNRETEKIEINEINKHKDNISIILQNSNATVIKGFWGTGYSCNFCQEQREIPSELKQHNLETHNNVTDEVVKVKYVSDLVIRLDITDLKCKLCNADMNSLEEFTEHLRKIHSKILHTDIKNHIIPFKFNTDNLQCVMCAKQFKYFKLLSEHMSEHYRNYECSFCERAFINKQSMQTHSYRHNKGVFKCSHCPKVFDSRPKRSVHERVVHALSNKTRKCSFCSERFATKDLVQSHEVKVHGVKPTVFSCQACNKSYHSQSSLTTHRKRYHLMLRPHKCSYCDMAFFSKIELRSHTVTHTKSRDFKCDMCTKSFGTRCSLNQHVRGHLDDRRFKCDDCERTFVHRTAWKVHMRNAQRDKKATEIDKHKDLTNVPKTLRIRVTTQAEDDNDMSSVQKNKNLVANFKTTVRSILECTNATPIRGYWGIGYACTYCSYQSASTSELKLHTLTAHAKNENELDNLKYVADMIIKLDVTALKCKICNIEIDSLSEIMNHIKVIHRKPIHLGISNHIVPFNFGKEGLTCAICLEQFNYFKHLSEHMNEHFPNYACNECSRCFINKRSLRTHTIRHMTGTFVCAFCPKIFDTRIKMKEHERVLHLKGSKTRKCGYCDEKFMDALRKTEHEVKEHGAPVRKYACGNPDPNREKMYKLIREIKAILTFTNATPYKSKHVRYYCAYCSTDGPHFEDPDDLRTHTRVEHVAHRTEKIEYAMRPYWVNEVLKVDIENLLCTVCCIVIGSWNEMFKHLIEKHNVVLDQAYTRVIPYILKPNLQCALCKESFSNYLHLDGHMNAHYNNYVCDDCADTFLSQNRLKQHVKIHNIGKYECRFCDKVFALSKYRKKHEEFIHEQVSKFKCIYCPERFTGEYLRHKHCLENHPEKIKTITCEYCGDTFTWRQYYLNHIRKKHENRKVFECPKCNKKFYGNYELKEHLLRHVGVKNFECTICHKKYISPNSLKNHMKQHRKKNEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -