Aexc045983.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465446.1:6069267-6078373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.032 4.3 9.4 0.1 1 23 80 103 80 103 0.93 2 17 0.039 5.3 9.2 0.1 2 23 132 154 131 154 0.94 3 17 0.00087 0.12 14.4 0.6 1 23 202 224 202 224 0.98 4 17 0.023 3.2 9.9 2.0 1 23 229 252 229 252 0.94 5 17 0.012 1.7 10.8 1.3 2 23 261 283 261 283 0.93 6 17 0.00014 0.019 16.9 2.5 1 23 290 313 290 313 0.97 7 17 0.0022 0.3 13.1 0.3 1 23 377 400 377 400 0.97 8 17 0.00012 0.017 17.0 0.1 1 23 497 519 497 519 0.98 9 17 0.0019 0.26 13.3 1.2 1 23 588 611 588 611 0.96 10 17 6.2 8.6e+02 2.2 0.7 9 23 693 707 691 707 0.91 11 17 0.0026 0.36 12.8 0.2 1 23 711 733 711 733 0.95 12 17 0.39 53 6.0 1.8 1 23 738 760 738 760 0.95 13 17 0.6 82 5.4 2.1 2 23 768 790 767 790 0.91 14 17 0.0002 0.027 16.4 1.9 1 23 797 820 797 820 0.96 15 17 6.1e-06 0.00084 21.1 5.4 1 23 826 848 826 848 0.98 16 17 3.2e-06 0.00044 22.0 2.0 1 23 854 876 854 876 0.99 17 17 6.4e-07 8.7e-05 24.2 0.6 1 23 882 904 882 904 0.99
Sequence Information
- Coding Sequence
- ATGTCAGTGATGCCTACATTAGGTAACCAAGAAACAGTGAGCAAGACACGTCGAAACAAAACTTTAGAGCCAGCTGTATTAGTAATCGTAGAACCTGAAGAGAAAGCCAAATTGCAGAAAAATACTAAACCAGAAGTAGAAGCACGGAGAAATGAGCTGTCGAAACATTACCAAAATATGGGACATATCCTGAAGTGTTCTAACGCCACACCGATAATGCGTCGCGGAACCATTGGATACGTATGCAGTTACTGCTTCGACGAATACCCAGACCCTGCTGACCTAAAAAAGCACACACTGGCAGATCATACATCTAAAACAGACCCTACACTTGGATACCCTAAAATCCCCAACTTATCAGAATATAGTGTCAAACTGGATATCACTGACCTCAAGTGCACGATATGCGCTAAGTCCATCGACAGCCTAGAAGATTTACTAACACATATCCAAGACGAGCATAACAAAAAGATTTACTCTGACATTCCAAATCATTTCATACCATTCAAATTTTCGACTGCAGATCTTACTTGCTGCCTCTGTGAGATGACTTCCGACAAGTTCAAAATACTGCAGGAGCATATGCATTCGCATTACAGGAACTACGTCTGTGAAGATTGCAATTCTGGGTTCGTTACTCGGGCATCTTATTTGAGACATCGCAGCAGACATATAAAAGGAGACTTCCCTTGCAGCTTCTGTCCTAAAGTTTACAATACGCTGTCGAAGAAGAAATCGCATGAGAGATTTAATCATATTAAAGCCCAAATGTATCCTAATCGATGTTTATATTGCGACAAAAGTTTTAAAGAATACTATCGCAAAGAAAGGCACATGTCTGAAGTCCACGGTGTTAAATTATCGTTGCACAAATGCAATGCTTGTGacaaaagttataaaaacaagGGTCGACTTCTGGTGCATATGAAAAGAGACCATCTAATGGAGCGTAGATACAAATATGAGGAAGAAAAAGTGGAAGCAGCTTCGGCAATTGTCATATCGTCGGATGATGAAGACATACCCATGGGATCTGAAAAGCATCTAATATGCAAGCATTTCGAAAATCTAAATCTAATCCTAAAATTTTCAAATGCCACGATGATTCACAAACAAACCGCTGAAGGATATTTTTGCAGTTATTGCTCGGAACCTTTTATGGAACCCAAAGATTTGAAAGAACACACTTTAACAGAACATGAAAAAGAAGTTGTCTATAGCAACATTAGATCAGCAACAGCGTTGTTAGTGAAGCTGGACATCACAGACCTGAAATGTATTATTTGTAACGATAATATAGATTCTCTCGAAGATCTTATTTACCATGTGACAGATAAACATAAACAGAACTTCCACACAGATATAAAAAACCAAATATTTCCTTTCAAGTTCGACACGGAGCAATTTAAATGCTGCCTATGCACTAATAACGCCATTTTTGCCACGTTTAGGTCATTACACGAGCATATGCACAAACATTACCGATATTACGTTTGTGAGAAATGTGACGTTGGATTCATAAACCGGGCGTCGTTAAAGAGCCATGCCTCCACCCACATGAAAGATAAACAACCAAAAGTGGCCACAGCTACGAACATCAAAGTAGAGCCGAAAACTGAAGAAGCTCTAGTAGAAGAAAATGTAACAATAAAACCTCCCAAACCACGCTTAAAGCGACTTCTGCAAAAGTATCTAGACAATCTGAAATTGATTCTAGAATCTACTAATGCGACGATGATACTCAAACATAACGATAAAGGATATTTTTGCTGCTATTGCCCGGAAACTTTCCAGGAACCCATGAATTTGAAAGCACACACTTTATCCGAACATAAGAATGAAGACAAATTTTATGGCAATATAAAAGCTAGAGGACCTGCTAGATTCTTAGTCAAACTTGACATCACCAATTTAAAATGCACGCTTTGTAGCGACAACATAGAATCTCTCGACGGTATATACGTTCATTTGAcggaaaaacataacaaaaagtTCCATACTGATATACAGAATCATATATTTCCTTTCAAGTTCAGTACAAAGGAAATGAAATGCTGTCTATGCATTAGTGACGTGGTATTCGCTACGTTTAGCGCATTACATGAGCATATGCACTTACACTACAGATACTTCGTTTGTGACGTCTGTGATGCTGGATTTGTAAATCACGATACTCTATCGAACCACAAAGTCATCCACACAAAAGGAAACTTCAATTGCCGACATTGTCCGGCCGTATTCGACAACATATACAAGAGAAGAAACCACGAAATACGCCATAGTAAAGATGGCAAATTGAACAAATGCCATTTCTGCAACGAATTTTTTAAGGATTATCTTACGAAAGAAATTCATCTTGCTAAAGTGCATGGTGTTGCTCCGGCGAAACATAACTGTACTGCGTGTGATCGGACTTTTCCTTCCAACAGCTTCCTTAGCGCGCATATAAGAAGGTTTCACCTAATGGAGAAGACTCACAAATGTTCAGAGTGCGACAGAGCATTCTTCAGAGAAAGTCACTTGAAGAAACATATGCTGTCTCATACAGGGGCTAAAAATTTTAAATGCGAAGTTTGTTCTAAGCAGTTTACCACTAAGTCTATTCTAACTAGGCATATGAGGATACATAACAATGATCGACGATTTAAATGTACAATATGTGATCAGGCGTTTGTTCAAAAACCTAGCTTGAACTGGCATATGAAGAAACATGCAGGAGCAGATATTTGTTCTACTTAA
- Protein Sequence
- MSVMPTLGNQETVSKTRRNKTLEPAVLVIVEPEEKAKLQKNTKPEVEARRNELSKHYQNMGHILKCSNATPIMRRGTIGYVCSYCFDEYPDPADLKKHTLADHTSKTDPTLGYPKIPNLSEYSVKLDITDLKCTICAKSIDSLEDLLTHIQDEHNKKIYSDIPNHFIPFKFSTADLTCCLCEMTSDKFKILQEHMHSHYRNYVCEDCNSGFVTRASYLRHRSRHIKGDFPCSFCPKVYNTLSKKKSHERFNHIKAQMYPNRCLYCDKSFKEYYRKERHMSEVHGVKLSLHKCNACDKSYKNKGRLLVHMKRDHLMERRYKYEEEKVEAASAIVISSDDEDIPMGSEKHLICKHFENLNLILKFSNATMIHKQTAEGYFCSYCSEPFMEPKDLKEHTLTEHEKEVVYSNIRSATALLVKLDITDLKCIICNDNIDSLEDLIYHVTDKHKQNFHTDIKNQIFPFKFDTEQFKCCLCTNNAIFATFRSLHEHMHKHYRYYVCEKCDVGFINRASLKSHASTHMKDKQPKVATATNIKVEPKTEEALVEENVTIKPPKPRLKRLLQKYLDNLKLILESTNATMILKHNDKGYFCCYCPETFQEPMNLKAHTLSEHKNEDKFYGNIKARGPARFLVKLDITNLKCTLCSDNIESLDGIYVHLTEKHNKKFHTDIQNHIFPFKFSTKEMKCCLCISDVVFATFSALHEHMHLHYRYFVCDVCDAGFVNHDTLSNHKVIHTKGNFNCRHCPAVFDNIYKRRNHEIRHSKDGKLNKCHFCNEFFKDYLTKEIHLAKVHGVAPAKHNCTACDRTFPSNSFLSAHIRRFHLMEKTHKCSECDRAFFRESHLKKHMLSHTGAKNFKCEVCSKQFTTKSILTRHMRIHNNDRRFKCTICDQAFVQKPSLNWHMKKHAGADICST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -