Basic Information

Insect: Agrotis exclamationis
Gene Symbol: -
Assembly: GCA_950005045.1
Location: OX465418.1:14517528-14533440[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00033 0.046 15.7 0.2 2 23 207 229 206 229 0.95

2 12 1.5 2e+02 4.2 0.1 6 23 239 256 237 256 0.92

3 12 0.00034 0.046 15.7 3.4 1 21 290 310 290 313 0.90

4 12 2 2.7e+02 3.8 1.0 5 23 322 340 320 340 0.94

5 12 0.00012 0.016 17.1 1.2 1 23 346 368 346 368 0.98

6 12 4.8e-06 0.00066 21.5 0.9 1 23 376 398 376 398 0.97

7 12 0.00013 0.018 16.9 0.7 1 23 407 430 407 430 0.98

8 12 0.00026 0.036 16.0 0.2 1 23 436 458 436 458 0.97

9 12 1.3e-06 0.00018 23.2 2.7 1 23 464 486 464 486 0.98

10 12 0.0013 0.18 13.8 1.0 1 23 491 513 491 513 0.98

11 12 3.5e-06 0.00048 21.9 4.2 1 23 519 541 519 541 0.97

12 12 0.00016 0.022 16.7 2.9 2 23 548 570 547 570 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00033	0.046	15.7	0.2	2	23	207	229	206	229	0.95
2	12	1.5	2e+02	4.2	0.1	6	23	239	256	237	256	0.92
3	12	0.00034	0.046	15.7	3.4	1	21	290	310	290	313	0.90
4	12	2	2.7e+02	3.8	1.0	5	23	322	340	320	340	0.94
5	12	0.00012	0.016	17.1	1.2	1	23	346	368	346	368	0.98
6	12	4.8e-06	0.00066	21.5	0.9	1	23	376	398	376	398	0.97
7	12	0.00013	0.018	16.9	0.7	1	23	407	430	407	430	0.98
8	12	0.00026	0.036	16.0	0.2	1	23	436	458	436	458	0.97
9	12	1.3e-06	0.00018	23.2	2.7	1	23	464	486	464	486	0.98
10	12	0.0013	0.18	13.8	1.0	1	23	491	513	491	513	0.98
11	12	3.5e-06	0.00048	21.9	4.2	1	23	519	541	519	541	0.97
12	12	0.00016	0.022	16.7	2.9	2	23	548	570	547	570	0.95

Sequence Information

Coding Sequence: ATGGCTATGAGCATGAAAGATTTGTGTAGATTATGCGCAAAGAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACtacaagattttatacaaattaTCATATTTGAGAACGACAATTTGCCAACGAAGATTTGCTTGAAttgtgaagaaaaaatggtGTCATTTCAACTATTTGTTCTAGAATGTTATAAAACCCAAGACACATTGAAAAAGATGtatgatgataattatgattCTCTTGACATTAAAGTTGAAAAATTACAGGGGCCTGTTGATTTTAATATCTCAATCAAATCTGAGGTAAAAGATGAAGTAACAACAGAAGATCTAGTTTGTGCACTGAATAACGAGGCAGCTTTATCAGTGATAGATGTTTTCTCTGATCCTCATAGTGATCATAATGACGTTGATATACATAATGGCGATGAtgttaatgatgatgatgatgatgactacctTGATAATATAGCCATAGCAGCtctaaaacataaacataagCGTATCAGAAGAAAAGAGTTAACAGAAGAAGAGGCAGAAGAGTTTAAACAAATCCTCAAAAAGCCCAATCCGAAAGCAAAAGATTTTATTAAatTGCAGTGTGATTTCTGCGGCCAAAAACTGAAGACATGGAGTGGTTTACGAGTACATTATGCAAAAGTGCATAAGAGTGCACCATTTGTCTACTGCCTGTGTGGCTATGCAGTAAGATCTAACAGTGTTCTTTACAAACATGTATCAGATCATAAGATTGAAAgtagaaaattattaaatacagAGGAGTCTGAAgatgatgaaaaacaaaattataaatatgcaAGCTTGAATGTGAAAGATTTTATAAGGTTTAAATGTACCCAATGTGATAAAGAGTGTTCCAGTTGGTACAGTCTGAAGGCACACTCTGAGTTTACTCACAGCATATCACCAGTGGTGTCTTGTATCTGTGGCATTACTCTCAAATCCAAGTCAGTTATGTACAAGCATATACATGACCATAGGAATCCCAATGTCTTTTCGTGTGACAAATGCCCCCGAATAACGAAAACCCTTTCTGCTTTAAATAAACATAAGATGCGACATATACCAATTTCAGAAAGAAAATTCATTTGTTCTTCGTGtgataaaatatttactacTAAGGATGCATTGAAATCTCATGAAAGATCGCACATACCGATAGAGGATCGTAAAATATATCGCTGTGATGTGTGTAACATGAAATTCACGACGCGGTCGTCTGCGGCGTCTCACAAGCGCGTAGTCCACGAGAAAATCAAGGGCTATGTGTGTGACCTGTGTGGGTACGCGTGCGGCACCAACGGCGAGCTGCGACAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTATGCAGGAAGTGCTCCAAACCTTTCAAGACCTATTCGAACCTGAAAACGCACATGGACACTCACGAAGACACGTCATACGAGTGCTACATCTGCAGACGAATACTGAACAGTCGGCGCACGCTCCGCAAACACCTTCTGGTGCATGAAGACAAGTGCAGGCATGTCTGCTCTTACTGCAACAAGGCTTTCAAGAGGAGACAGACTTTGAAGGTTCACATGTACACACACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCTGCGCAAGCGCATGACAACTACCCAAACTACGAAATGCAAGGGaATTTCATCAAGAACGACGTCGCACCTATAAATATTTCGGTAGCTAAAAACGAAGTTGAGGCTAtgtaa
Protein Sequence: MAMSMKDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIFENDNLPTKICLNCEEKMVSFQLFVLECYKTQDTLKKMYDDNYDSLDIKVEKLQGPVDFNISIKSEVKDEVTTEDLVCALNNEAALSVIDVFSDPHSDHNDVDIHNGDDVNDDDDDDYLDNIAIAALKHKHKRIRRKELTEEEAEEFKQILKKPNPKAKDFIKLQCDFCGQKLKTWSGLRVHYAKVHKSAPFVYCLCGYAVRSNSVLYKHVSDHKIESRKLLNTEESEDDEKQNYKYASLNVKDFIRFKCTQCDKECSSWYSLKAHSEFTHSISPVVSCICGITLKSKSVMYKHIHDHRNPNVFSCDKCPRITKTLSALNKHKMRHIPISERKFICSSCDKIFTTKDALKSHERSHIPIEDRKIYRCDVCNMKFTTRSSAASHKRVVHEKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYICRRILNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAAQAHDNYPNYEMQGNFIKNDVAPINISVAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: iTF_00043790;
80% Identity: -