Aexc033352.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465434.1:19501358-19517680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00056 0.077 15.0 0.7 1 23 275 297 275 297 0.98 2 12 0.042 5.7 9.1 1.7 2 23 305 326 304 326 0.91 3 12 4.1 5.7e+02 2.8 0.3 1 23 330 352 330 352 0.88 4 12 6.5e-05 0.0088 17.9 0.7 1 23 357 380 357 380 0.97 5 12 0.00042 0.058 15.3 0.6 1 23 384 407 384 407 0.95 6 12 0.0078 1.1 11.4 0.3 2 21 423 442 422 447 0.91 7 12 0.0021 0.28 13.2 0.4 3 23 457 478 457 478 0.95 8 12 0.00085 0.12 14.4 0.4 2 23 497 519 496 519 0.97 9 12 4.5e-06 0.00062 21.6 1.0 1 23 530 552 530 552 0.97 10 12 1e-05 0.0014 20.4 2.8 1 23 558 580 558 580 0.98 11 12 0.00016 0.022 16.6 0.4 1 23 586 608 586 608 0.98 12 12 1.2e-06 0.00017 23.3 0.4 1 23 614 637 614 637 0.98
Sequence Information
- Coding Sequence
- ATGAAGACTATTATGGAGAGAGGAAAAATTTTTGCTGTACTAAATAATGTCTCAGCTGTTCGCTACAAATCACCTCGCTTGCAGAGGAAGTTGATATCGGACTTACCACGCATTAGATCCCAGTACAATAACTTGCCACCTTATGCCTGCTATGAGTGTGCAGCACTGGTGAGGAAGTTTTATTTCTTCAGACAGAAGTGTCTTCGGAGCCAGGCAGTGCTCCATGGTGCAAAAGATTCATTTggaaaggtacaATCTGAAAAGGTAAAATTAATAGATCGTGAAGGTATTCACATAGTATCTAATCTGAAAATTGTCAACTTACCAAACATAGACATAGATCTGGTCCAAGAACCTGAAACAAATGTAGAAGTGAAGCCTGCCAgctgtgatgatgatgacatgatTCAATTTGATCATGACTATGCTTCCTCGCACTCAATGGATGCTGATCTCTccattgatgatgatgaagcagtgTTACTTTATATTGAGAAGGATAGCGAAAATAATGAATCAGATGATGAAAAGGTGAACTTGAAAGATGAGTGTGAAGGTCTTGAaTTTGCTGTCGGTACAGAATACCCTGGATTTGTAAATGAAGAACCTACAGTGTTAGAGACGAAAAAGACCGACCGGTTGGAACCAGGAACGGTTAAGCGTAAAAACAATGATTTGAGTTCGGGTTTAAGGCCGAAGGTTCCTAGTGACGGGACATGTGACGATTTTGCGCAGCACTTCGATGTTATTTCTTTGACAttggaAGAGCAAAAAGAAAGAATTCTGAAGCGAAAGGAGTCATCCAACTACTTAAACTCGCCATTCAAGTGTAGTCTGTGCTTTAAAGGGTTCATTGACAATGATGCCTTTAATCTCCATGTCAGCAGACATGCTGTGaCCGCAGGTAGCATAGAGTGCGAAATCTGTAAGTTAAGATTTAGAACAAAGAGTCTCTGTCAGACACATGCGGCCAACCACAAGCAACAATACGTCTGTAAATCCTGTCCTTTCGTAACCACTTTCATGAATCAAGCTAAGGAGCATCTAGGGTGGCATAAAGGGATTACTTTTGTATGCAAATATTGCGATGAAACATTTACCATTTGGACGTCGTACATGAGTCACGTTCGCATCAAGCACCCGTCGGAGTTCATATGTGGCTACTGCGGGTACTCCTTCGTCAGCAAGTTGGGGCTGACCATGCACAAATCTAAGATGCACAAGGAAATAATAAAGAAAGCAAAGGAAAATCCAGAAGAAGGTCTATATTGCCAAGAGTGTGACATCAAATTCATATCAGAGGAAGCGTACAAGAGGCACACGATCATGTCCACCAAGCACGCACAGACTACAGATCCTATTAAAGGCTGTCGGGCTTGCGGTGCGACGTTTGAAAATTCCGAAGAGTTGCGACTGCATCGTCGTAAGGAACACCCGCGGAAGTTACCCGAGAACTACAGAAGGAAATCTAAACACAACTGCCCTAAGAAATGTGAACATTGTCCGGAAGAGTTCCCGAACGCTGGCGAGTACTGGTCACACTTCCGTCGCGCACACCCCGACAAGAAATACCCTATACAGAAGAACCACATGTGCGATATATGTGGCAAGGATTTCACGAGCAACGCCTTACTAATATATCATAGGCGCATGCACATCGGAGAGCGACCGTTCAAATGTTCACATTGCGACAAGGCTTTCACCAACAGCTGGAAACTCAGCGTTCACGAGAAGTCGCACTCTGACAACCGCCCGTTTCCTTGTTCTGTTTGTTTCAAGGCTTTCAAGGAGAAAGGAGCCTTGGATAGACATTTTAGAATTCACACAGGCCAGAAGCCCTACGAATGTGAAATATGTGGCAAAGCGTTCTCACAatcaaacagtaaaaaaatgcaCATTCGGACCGTACATCTGAAGCAACCAGGGCCAATCAGGCGGAACCGACTTCAGAGACGGAAGCAAGGACCTAAGGAACCACCGGTGTACGAGTAG
- Protein Sequence
- MKTIMERGKIFAVLNNVSAVRYKSPRLQRKLISDLPRIRSQYNNLPPYACYECAALVRKFYFFRQKCLRSQAVLHGAKDSFGKVQSEKVKLIDREGIHIVSNLKIVNLPNIDIDLVQEPETNVEVKPASCDDDDMIQFDHDYASSHSMDADLSIDDDEAVLLYIEKDSENNESDDEKVNLKDECEGLEFAVGTEYPGFVNEEPTVLETKKTDRLEPGTVKRKNNDLSSGLRPKVPSDGTCDDFAQHFDVISLTLEEQKERILKRKESSNYLNSPFKCSLCFKGFIDNDAFNLHVSRHAVTAGSIECEICKLRFRTKSLCQTHAANHKQQYVCKSCPFVTTFMNQAKEHLGWHKGITFVCKYCDETFTIWTSYMSHVRIKHPSEFICGYCGYSFVSKLGLTMHKSKMHKEIIKKAKENPEEGLYCQECDIKFISEEAYKRHTIMSTKHAQTTDPIKGCRACGATFENSEELRLHRRKEHPRKLPENYRRKSKHNCPKKCEHCPEEFPNAGEYWSHFRRAHPDKKYPIQKNHMCDICGKDFTSNALLIYHRRMHIGERPFKCSHCDKAFTNSWKLSVHEKSHSDNRPFPCSVCFKAFKEKGALDRHFRIHTGQKPYECEICGKAFSQSNSKKMHIRTVHLKQPGPIRRNRLQRRKQGPKEPPVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -