Aexc038326.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465438.1:13678112-13683487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.045 6.2 9.0 0.2 5 23 347 365 346 365 0.96 2 12 0.014 1.9 10.6 0.2 3 23 373 393 371 393 0.94 3 12 0.17 23 7.1 0.2 2 23 401 422 400 422 0.94 4 12 3.1e-07 4.3e-05 25.2 1.0 2 23 428 449 428 449 0.98 5 12 0.0032 0.43 12.6 4.3 1 23 455 477 455 477 0.98 6 12 0.00017 0.024 16.6 0.6 1 20 481 500 481 502 0.94 7 12 7e-05 0.0096 17.8 0.2 1 23 535 558 535 558 0.96 8 12 0.00097 0.13 14.2 0.1 3 23 567 587 566 587 0.99 9 12 3.1e-05 0.0042 18.9 0.4 1 23 598 620 598 620 0.98 10 12 8.3e-05 0.011 17.6 4.5 1 23 626 648 626 648 0.98 11 12 0.0031 0.42 12.6 0.3 3 23 656 676 654 676 0.98 12 12 6.7e-06 0.00091 21.0 0.7 1 23 682 705 682 705 0.96
Sequence Information
- Coding Sequence
- ATGGATACGTGGTCCGATCTCTGCCGCTGTTGTTTGTCTGCCAATTCCGAAGTGTCACTCCTAGATTCGGAACAGAATGTAACAGAGAAGTTTCTTGAAGTAACTACAATCAAGGTCAAGGAAGACGATGGTCTACCGCAGAAGCTGTGCTCAGATTGTTATGCTACCATGAACTCTGCATACCAGTTCCGTAAACAGTGCATCAAAATGGACAATGAACTACGTTTACAGCTCAATGCTGTAATAGATATGGCTAAAAGTAataatcttttaaaatatgaGGCTATAGATGAAGACGATAATATTGGAAATGATCCCATGAAGCAACTTGAGGCTATCATTAAGCAAGAGCCTACTGACagtgatgatgattactattaTGTCTTGGTCATTGATGACCccaaagataaggataaagaagAACAAACCGAAGTAATGAATATTAAACAAGAACAGTATGATGAAGATATTGCTGAAACAACTGATAACactgaaaatatgtacacaCAACATCCCTCTCAAACCTCCCAGAGCCAGTTTGAAGACTCAATTGAATCCTTTCTAATGTCCAACACTAAAGTGTCAGCTAATGTACCAGCAACTATTCTAGAAAATGAAGAAGAGAGCCAAGAAACTGATGATCTTGATGGAGCCATGAACATAGATGAGACCCAGGACAGCATGGGCCAAGAGCAAAACTATGAAGAAATGGAAGATATACAAAACAATGGAAACATTACTTCCAATGTAATCAGAGAGCTGCCTAATTCGAAAAACTTCATCAAAATTTTGACCACAGGAGACACTGATGGCACTATTCTGTTGAAAGGTAATGATAGGATCCAGTATTTGACTGATTCCCAACTAGTCACAAATGAAGATGAAGATGCATTGTCCCAAGAAGTGATATTCTGTGAAGGTGATGACACTTCTCAGTTCCAAATCCTGAAATATGATGGCTCAGAATTAGTTATAGAATATGCTGATGATAGCCAAATAGCTACCGTACTGCAACAAGAAGATGGGACATTCTTATGTGATTGTGGAGAGCAGTTCGAAGACCTAGCAGATTATGAGAAGCATCAGTTCAAGCATAATCCTGCTGGAGAACATTTGTGTAACTTATGCGGTAAAGGCTTTGAGTCTGCAGAAATTCTGACTGGACATATGTTACTCCACAGCAGTAGTGGGCTCCTAATTACTTGTCCATTCTGTAACCAGCCTATCAGACGAAACGCCTTGACACAACACATCAAATATGGTCACAACAACATCAAACCTCGCTGCAATATTTGTTTCAAGACATTTGCCAATCCAAACAACTTGAAACGTCACATGATGATTCACAGCGGCATCAGGGAGTTCGAAtgtgacatctgtttcaagagATTTCACCAGAAGATCACAATGCAAACTCACAGGTTAACGCATATGAATCCATTTTCATGCAACCAATGTGACCAGTCATTTGAGAATAAGACTGCACTGACCAATCACAAAGAGTCTGATGACTGTTCTAAGTCCAAAGTGATAAAGGTCAAAGAAGAACTGATGAAGACTGTAAAACAAGAAATTACCACAAATCTTGGTAAATTGCTTGGCTATGCTTGTTCACTGTGCAAGAAGATGTTTTCAGTGGAGTCTGCTCTGGAGCAACATATTGAGAGCACACACATAGTTGACCCGACAGAGTTGCTATGTTCAGAGTGTGGTGAAGTGCTGCCATCTAAGAAGGATATGCAAACTCACATCCTGACTCATAagaatttaaaagtgaaaaatgCAAAGCGGTTTGAATGTAGTATTTGTGGTAAAGGGTGTTCAAGCCAGGCAATGTTACTGATGCATGAGCGAGTACATACTAATGAGAGGCCGTTCCCGTGCCAGCTATGTTCTCTAcggtttaaaacaaaaactcatTTACGGACTCATCAGCTGACTCATACTCGTGAGAAGAAGTTCGGATGCTCAGTATGTATGAAGTTCTTCGCCCTCAAAGGTAACTTGGTAGTTCATCTAAGGACACACACAGGGGAACGTCCATATGTCTGCTCTATTTGTGGCGAAGCTTTCATAGACTCTAAATATTTGAAGAAGCATAAACTAAAGAAGCATTCTATAGATAATGTGCCCTGGAATCAGTACTAA
- Protein Sequence
- MDTWSDLCRCCLSANSEVSLLDSEQNVTEKFLEVTTIKVKEDDGLPQKLCSDCYATMNSAYQFRKQCIKMDNELRLQLNAVIDMAKSNNLLKYEAIDEDDNIGNDPMKQLEAIIKQEPTDSDDDYYYVLVIDDPKDKDKEEQTEVMNIKQEQYDEDIAETTDNTENMYTQHPSQTSQSQFEDSIESFLMSNTKVSANVPATILENEEESQETDDLDGAMNIDETQDSMGQEQNYEEMEDIQNNGNITSNVIRELPNSKNFIKILTTGDTDGTILLKGNDRIQYLTDSQLVTNEDEDALSQEVIFCEGDDTSQFQILKYDGSELVIEYADDSQIATVLQQEDGTFLCDCGEQFEDLADYEKHQFKHNPAGEHLCNLCGKGFESAEILTGHMLLHSSSGLLITCPFCNQPIRRNALTQHIKYGHNNIKPRCNICFKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMNPFSCNQCDQSFENKTALTNHKESDDCSKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHIESTHIVDPTELLCSECGEVLPSKKDMQTHILTHKNLKVKNAKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHSIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039097;
- 90% Identity
- iTF_00037092;
- 80% Identity
- -