Basic Information

Insect: Agrotis exclamationis
Gene Symbol: -
Assembly: GCA_950005045.1
Location: OX465430.1:19223261-19227095[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.8e-06 0.00052 21.8 1.7 1 23 219 241 219 241 0.98

2 9 3.6e-08 4.9e-06 28.1 1.6 3 23 249 269 247 269 0.98

3 9 0.00012 0.017 17.0 0.3 1 23 275 297 275 297 0.98

4 9 1.3e-05 0.0018 20.1 1.7 1 23 303 325 303 325 0.99

5 9 2.7e-05 0.0037 19.1 1.7 2 23 504 525 503 525 0.96

6 9 3.5e-09 4.8e-07 31.3 1.6 1 23 531 553 531 553 0.98

7 9 0.003 0.41 12.7 0.6 3 23 561 581 559 581 0.97

8 9 7.6e-05 0.01 17.7 1.5 1 23 587 609 587 609 0.99

9 9 0.024 3.2 9.9 0.8 1 23 615 639 615 639 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.8e-06	0.00052	21.8	1.7	1	23	219	241	219	241	0.98
2	9	3.6e-08	4.9e-06	28.1	1.6	3	23	249	269	247	269	0.98
3	9	0.00012	0.017	17.0	0.3	1	23	275	297	275	297	0.98
4	9	1.3e-05	0.0018	20.1	1.7	1	23	303	325	303	325	0.99
5	9	2.7e-05	0.0037	19.1	1.7	2	23	504	525	503	525	0.96
6	9	3.5e-09	4.8e-07	31.3	1.6	1	23	531	553	531	553	0.98
7	9	0.003	0.41	12.7	0.6	3	23	561	581	559	581	0.97
8	9	7.6e-05	0.01	17.7	1.5	1	23	587	609	587	609	0.99
9	9	0.024	3.2	9.9	0.8	1	23	615	639	615	639	0.95

Sequence Information

Coding Sequence: ATGGCTTTCCCTTATTTAATAGACACGACAACACCGTACGTCCTCTACAAAGATGGCGTGGAGCGAGCTCCCCCAGGCACGCAGTGGGGTGGCGGAGTGCTGGACGGCGGCTACCAACCCATGCAGCACCAGAGCCCTGGCGGGCCCTCACCGCAACCTGAGCCCCAGCTCGCGTCGCCCGCGCCTTCGCCCTACCCCCCTGCTCCACCGCCCCCAGACCCCACCGGCGCCGCAGAGGACGCAGCCCAGCAACTCGCTCAACAACAGGCACAGCAGCAAgcgcaacaacaacaacaacagcagCAGCAACAGCAACAAACATCTCCCGAACACATGCAAGTGGAGCAACAGCTCCAGAGCCAATCCCAGCCACAGCCTCCCTCACAGGATCACCTGGACCGCACGCCGTGCTTCGTGCCGCAGCCGGACCTGCAGCAGCAGTACACGCCGTACTTCAAGGAGGCGCGACCAGCGAGCCACATGCTCGGCACGGGCGGCTTCCCGCTACATTACCTGAAACAGAACGGTGGTGTACTGTCACTGGAAGGCCCTCTAGACCAGTATGCCGCGCCCGATCTTCGCCACTTGCCCGACATTGTGCAACCTGAGCCACCGAAGCCGAGGAAGCACAACCCGAACTCAGAGCTCCGCCTGTTCAAGTGCCTGACGTGCGGCAAGGACTTCAAGCAGAAGTCGACGCTGCTGCAGCACGAGCGCATCCACACGGACTCGCGGCCGTATGGGTGTCCGGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCACCTGACGCAGCACCTGCGCATCCACGCGAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATAtaccccccgccccgcgcgCGCCGCCCGCACTGACTCCGGTCACTGCCGCCGGCGCCCGCGCTCCCCGCCGCCCCCGCACCGTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAGACAAATTCTCGGTTCCCTCGTCGCCCGTGTAACGCAGGGCGCCCGCGAGACGCGGAACCGACCGCCGGACGTTCCCGTAACCGTTCCCAATGTTTCACCGCATCTCATCTTCAAGAACGGAACGACGCCCACGCTATGGCCCCAGGACGTGCCGTTCCCGGCCGATGAGAACAAGGAGGAGATCCAGTCGACGTTCGGCGACGCGGACGGACAGAATGGAGACCAGCGCGGCTCCTGCTTCTCACCAGGTGACACGGCGCAGTACCCTGCATATTTCAAAGATACGAAAGGTCTCAATCATTCAGTCTTCAGCTCGGGGCTCTCTCTGCAATATTTGAAGGGCGGCAAGCTACCAGACGTACTCGGAGGGCGGGCGATGCCCCTGTACGTGCGCTGCCCGATTTGCCAAAAGGAGTTCAAACAGAAGTCAACGCTGCTACAACACGGGTGCATCCACATAGAGTCACGTCCATACCCCTGTCCCGAGTGCGGCAAGCGCTTCCGACAGCAGTCGCATCTGACGCAGCACCTGCGCATCCATACCAATGAGAAGCCGTACGGCTGCGTATACTGCCCGCGCTTCTTCCGCCAGCGGACTATCCTCAATCAGCACTTGCGCATCCACACCGGGGAAAAGCCGTACAAGTGCACCCAGTGCGGCAAAGACTTCCGACAGAAAGCCATCCTGGACCAACACACGCGGACGCACCAGGGCGACCGGCCCTTCTGCTGCCCCATGCCCAACTGCCGGCGGCGCTTCGCCACGGAGCCCGAGGTTAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCTAAGGCGCGGCGCGCTGATGCCAACAAGACGCCGCGGCcgctgccgcccgccgccgccgtggtgAAGCCCGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCGTTCCAGCAGTTCGGCGGTGCCGGTGAGTTCAAGCCGGCGGTGGGTCCAGGTGCGCCCGTGGCCTGCCTGCCGGCGCAGTga
Protein Sequence: MAFPYLIDTTTPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTGAAEDAAQQLAQQQAQQQAQQQQQQQQQQQQTSPEHMQVEQQLQSQSQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPASHMLGTGGFPLHYLKQNGGVLSLEGPLDQYAAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPRPARAARTDSGHCRRRPRSPPPPHRRFGLASIGLPIRQILGSLVARVTQGARETRNRPPDVPVTVPNVSPHLIFKNGTTPTLWPQDVPFPADENKEEIQSTFGDADGQNGDQRGSCFSPGDTAQYPAYFKDTKGLNHSVFSSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADANKTPRPLPPAAAVVKPELYFPQCYAPPFQQFGGAGEFKPAVGPGAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00888518;
80% Identity: -