Acla042386.2
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940944.1:11409439-11433724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00042 0.052 15.5 3.8 1 23 6 28 6 28 0.98 2 22 2.1e-05 0.0026 19.5 0.4 1 23 35 58 35 58 0.93 3 22 2.4e-05 0.0029 19.4 0.3 1 23 66 89 66 89 0.92 4 22 0.0046 0.57 12.2 0.5 2 23 96 116 95 116 0.97 5 22 0.25 30 6.7 0.4 8 23 149 163 148 163 0.85 6 22 0.25 30 6.7 0.4 8 23 196 210 195 210 0.85 7 22 0.37 46 6.2 0.2 12 23 246 257 242 257 0.88 8 22 0.37 46 6.2 0.2 12 23 293 304 289 304 0.88 9 22 0.37 46 6.2 0.2 12 23 340 351 336 351 0.88 10 22 0.37 46 6.2 0.2 12 23 387 398 383 398 0.88 11 22 0.91 1.1e+02 5.0 0.1 12 23 434 445 430 445 0.87 12 22 0.37 46 6.2 0.2 12 23 481 492 477 492 0.88 13 22 0.25 30 6.7 0.4 8 23 525 539 524 539 0.85 14 22 0.25 30 6.7 0.4 8 23 572 586 571 586 0.85 15 22 0.37 46 6.2 0.2 12 23 622 633 618 633 0.88 16 22 0.00035 0.044 15.7 0.8 1 23 639 663 639 663 0.90 17 22 0.0026 0.32 12.9 1.5 1 20 669 688 669 690 0.93 18 22 0.12 15 7.7 0.4 2 23 696 718 695 718 0.95 19 22 0.47 58 5.9 0.1 1 23 727 750 727 750 0.94 20 22 1.4 1.8e+02 4.3 4.9 2 23 757 779 756 779 0.95 21 22 0.37 46 6.2 6.6 1 23 1085 1107 1085 1107 0.91 22 22 6.3 7.7e+02 2.3 0.4 2 23 1118 1138 1117 1138 0.73
Sequence Information
- Coding Sequence
- ATGAGTGAGAAACCTTTCCAATGTCGTTACTGCGACTACGCGTGTCGAGACAGCTCCACGATAAGGAAACATATGGAGAGGCATCTAGGAATATCTAAGAACTACCCTTGCTCCGTGTGTAATAAGAATTTCAAAAAGAAGACGTCGCTACAAGCACATATAGACGAGGTACATTTTGATCTGGACACGAGGAAGTATCCGTGCGAGCAATGCGACAAGATGTTCAAGACTAAGCAGACGCTTACCTCTCATGTTATCGCAGTCCACGACAGATCAAATCGCGTCAAGTGCGAGATCTGCGCACGCGTCATCACAAAAAATAACCTCCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTAAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTAAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTAAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTTTAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACAACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTAAGTCATGTTATAAGAACAACCTCCAGTCTCATATGCGACGACACATTGATGTAAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTAAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTTATAAGAACAACCTGCAGTCTCATATGCGACGACACATTGACGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGGTGATTTAAAACGCCACCAATTAATCCACTACCCGGATTACCAACACATTTGTACAATGTGCAACAGACGCTTCCCTCGCAAGTGGAGACTCAAGAAACATACGTTAAATGGCTGTCAGAGAGTACAGTGTGATCATTGTGGACAGCTattCACAGCGAAGACCATCCTTGCTCAGCACATAAAGAATGCTCACGGTCCATACCCGAAGTCTAGAGAGTATTTGTGCGACGTCTGTGATATGGTCACTTACAGTAGACGAGGTATTATACAACACTTGAAGTATGGACATGGAACTGAGAAGGACACAAAATGCCAAATATGTAGAAAGGATTATTTCAAATGTCAAACTTTGAAGGAACATTATTTAAGTCGCCACAACCTGATTTACACTTTGATGGACCAAAAGAAAGATGATTTAATAGAAATAAAAGAAGAACCCTTAGAAGAAATTGAACATGTACCCGACACTACAGAATTTATGTATGAAGTTGACATACAGAAAACTGAAGTTGATGAAATACCTCTAGAAGAACAACCTTTACAACTCCAGCCCCCGTCGCCAGAACACTTTCAAATAGATTCAGATTCCATCACGTACTCTAAGAAGGTGTTATCAGAAGATATATCTCGCAGTTTGATAGATAAGAGAGAAGAGACTGATGTGTTCCACGAACTGTTCGTAGGACATGCGCTGGACATTAGCGGAGTTCCACTAGTTAATGAGTTACCAAAACAATTAGTAGACGAAGAGAAACAAAAGCGCGTTGAGAAACGTCTAGAAAAACTTCTAACTAAAGTACGGGTGCGTAACCAATGGGTAGTTTTGGAGAAACTGCGCAGACAATATAACAGACGAATCAAAATGGCTACCAGTGGTGGGGAGAAGAAAGAACAAACATCGATAAGATATTTTAAGAAAACAGAAAACAATAACGAATCTACTAAAAAACAAGATAATACCAAAAGTGATGAAGAAAACAATATCAAAGATGATGAAACAAGGAATAACcaagaaaataatgaaataaacaaaGAACAGATTGACTTAGAACAAGAAAATGgcgaaaatattaaaaatgatgAAATCGGTGAAGACAAAATCAATGGTGGTGAAATTGGTGAAGACACAATCATTGGTGATGAAAATTGTAAAGTCACAATCAATGATGATGAAATGGGTGATGCTGATGAAACAATAGATGATGGAAAAGATGTAGATTATAGAGAAGATGATTTTGAAAGTAATAGCGATGAAGAGGTAAATCCGAATGGAAAACTCAAGTTTAATACTCATCAGTGTTATATTTGTTTTAAGCTCTTCACAACAAAAACAGATTTAAAACTCCACTGCAAGGAACACTTCGACATATGCAACGAAAAAATGCTGAAGAAATGTCCGTTTTGTGGCTACGTCACAAATCTTACCATCACAAGACATATTAGATTAGTCCACAATATATCTTTAGAAATACCGTACGGACGAATCAAGGAAAGAGATACGGGAGTAGGGTCCAAATACGTCTTTCAAATCGACAAAGATTGTGACTTAGAAGTCATACCAAGTGAAGAAACTACAGAACCTAAGAAGGATGATGTAGTTAAAAAAATTGAGCCAAAACCTAAAAAAATGGTCAAAGTAAAGAAAAAAGCATTTGTTAGGAAAATTATGATAAgcaaaaaagaatattctagAAGGATGGAGATTAAAAACCAAATGAGAAAGAGAATAGAAGAATCTAGAACTTAA
- Protein Sequence
- MSEKPFQCRYCDYACRDSSTIRKHMERHLGISKNYPCSVCNKNFKKKTSLQAHIDEVHFDLDTRKYPCEQCDKMFKTKQTLTSHVIAVHDRSNRVKCEICARVITKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGKSCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGKSCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSFKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRQHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGKSCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGKSCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMLQAMREEIQGYGESCYKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMGDLKRHQLIHYPDYQHICTMCNRRFPRKWRLKKHTLNGCQRVQCDHCGQLFTAKTILAQHIKNAHGPYPKSREYLCDVCDMVTYSRRGIIQHLKYGHGTEKDTKCQICRKDYFKCQTLKEHYLSRHNLIYTLMDQKKDDLIEIKEEPLEEIEHVPDTTEFMYEVDIQKTEVDEIPLEEQPLQLQPPSPEHFQIDSDSITYSKKVLSEDISRSLIDKREETDVFHELFVGHALDISGVPLVNELPKQLVDEEKQKRVEKRLEKLLTKVRVRNQWVVLEKLRRQYNRRIKMATSGGEKKEQTSIRYFKKTENNNESTKKQDNTKSDEENNIKDDETRNNQENNEINKEQIDLEQENGENIKNDEIGEDKINGGEIGEDTIIGDENCKVTINDDEMGDADETIDDGKDVDYREDDFESNSDEEVNPNGKLKFNTHQCYICFKLFTTKTDLKLHCKEHFDICNEKMLKKCPFCGYVTNLTITRHIRLVHNISLEIPYGRIKERDTGVGSKYVFQIDKDCDLEVIPSEETTEPKKDDVVKKIEPKPKKMVKVKKKAFVRKIMISKKEYSRRMEIKNQMRKRIEESRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -