Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940936.1:18942978-18956753[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.3e-05 0.0065 18.3 3.0 1 23 306 329 306 329 0.96

2 9 2.6 3.1e+02 3.5 6.5 2 23 337 358 336 358 0.96

3 9 0.0086 1.1 11.3 5.6 2 23 390 411 390 411 0.98

4 9 0.00025 0.031 16.1 0.3 1 23 415 438 415 438 0.97

5 9 0.31 38 6.4 0.5 2 20 452 470 451 472 0.92

6 9 0.00045 0.056 15.3 0.8 2 23 509 531 508 531 0.91

7 9 0.83 1e+02 5.1 0.1 1 23 544 565 544 567 0.80

8 9 2.6e-05 0.0032 19.2 3.1 1 23 571 593 571 593 0.99

9 9 7.8e-05 0.0096 17.7 3.3 2 23 600 622 599 622 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.3e-05	0.0065	18.3	3.0	1	23	306	329	306	329	0.96
2	9	2.6	3.1e+02	3.5	6.5	2	23	337	358	336	358	0.96
3	9	0.0086	1.1	11.3	5.6	2	23	390	411	390	411	0.98
4	9	0.00025	0.031	16.1	0.3	1	23	415	438	415	438	0.97
5	9	0.31	38	6.4	0.5	2	20	452	470	451	472	0.92
6	9	0.00045	0.056	15.3	0.8	2	23	509	531	508	531	0.91
7	9	0.83	1e+02	5.1	0.1	1	23	544	565	544	567	0.80
8	9	2.6e-05	0.0032	19.2	3.1	1	23	571	593	571	593	0.99
9	9	7.8e-05	0.0096	17.7	3.3	2	23	600	622	599	622	0.97

Sequence Information

Coding Sequence: ATGTCTGATCTAAAAGCTTGCCGAATATGTCTGTGGAAAGGCGTAAAACTATATCATTGGGACAGTTTTCACTTAAAACAATACTATGAAGAAATTATGGCGAAAAAAGTAAATGAAAGAGATGGGTTACCAAACTATTTCTGTTATGAGTGTGCAGCAATTTTGTAcaagtttcataaattcaaGGAGAAATGCTGGATGGGTGAGAATGCTCTCCAGGAATTGCTTTGGAGTGGCCCTatcacCTTATCATCAATTACCCAAATATACAGAGAAGACAAAGATCTACAATCACCAATAGGAATTATATCAGTTAGCAATAGAGTCAAAACACAACTTGTAAAACATAAAACACTGGCAAATAATCAgccaaaagaaacaaaaatagatGAAACAACTGAAAATAAAGTAGGTTATGAAAGCGAAAACTCTTTGGATGATAAAAATCTAGAGTATAAGAGTGAAATAACTACTGTAAATGACTGTACAGAAGATGAAAAGACAAATATTGAAGTTCTTATTGAAGACAAAGCTATGCCTGATGATGTAGAAGATGGTAGAAACTTTAGTGACCATGATGAATTATGGCCAGAAAGTACTGATGATGCTGCTAAACCAGACATCAAAGAAGAAATCAACAATGAAATTACTGTTACAGAACAAAGTAACTTAATAACAGAACAATCAGAAAGTAACAATGAAACAGTACCTAATAATAATCACAAAAGAAAGAAGAATAAAGCCACAAGTAAAGATTCATTAAATAAGAAGGCTAAAAAGTATGAAGTTGTAGTAGGCAGTGTAAAAAGTAATTACTTAGATCCAAAACATTGGTTGAAGATCAAATTGACGGAAGACAACGCTATGGTAGAGTTCAAAGAAAGAGCTCAAGACCGGAAGTACCTGGCAGCTGCTCATAAATGTACAGATTGTTATAAAGGCTTCTCTAAAGAGGATATGTTGAACAGGCATATCAAATTAAGGCATGATGAGTCTTTAGGTCCAATAGAGTGCCGTTTCTGCAAAATGCGTTTCAAATGGAAATGTCACCTCTCTCAACATATAAAACAACACTTGACGAAGTTCAAATGCTTGAGATGCGAGCTAACGTGTCCCTTAGAGACTACAGCTCAGTTTCACAACGAATATCACAACGGAGTAATAAGAAAGTGCACACATTGTGGAGACGAATTCAGACATCTATCGACATACTACACACACTTGCGCACGCATCGCAGCGAGCATGTGTGTACGTTGTGTGGCGCGTCGTTCGTCAGTGCCGTGGGACTCAGATTGCATAAAAAGACCATGCATGTTAATACGGTTATTACTCCTGAAGAAGATTCGAACACATACTGCAATCGATGTGACATCAAGTTCGAGACGCTGAAGGCTTATGAGGAACATGTATTTCACTCGGCTAAACATGCTGAAGGCGTTGAGGATTTGGTTTCCGAGATTCCAGCACCATCATTGCCGAAGCGGAGGAAGAACATTTTCAGAAGACCTGAACGGAAGATCACTTCTTGTCCAATATGCAACAAAAATTTCCCAAGTCAGACGGCCTATATAAAACATCACACAGCGGAACACAAGGATAATCCTCTACCTTCCAAAGAAGAGGAGAGACACATCTGCGAGATTTGTGGAACATCACTAGCGGCTGGCAGCGTTGCAAGTCATCTAAACACCCACACTCGAGAGAAAATTTATACATGCTCGACGTGTAACATGCAATTTAACAGTAAAAGCAGTATGACGAGACATCAACtgaCGCACACTGAGGAGAAACCTGTTCAATGCTCGATGTGCGAAAAACGCTTCAAACAGAAAAGCAGTATGAAGCTACATTTTCGAACCTTCCACCTCAAGGAACCCTATCCTAAGAGAAACAGAAGAAAAAATGCCGATATCCAGCAGGAACTAGAAGATTTCAGAATCAATCAAGAAGACTCAGAGGAaaacctgcacgcagatagaatcgccatgctacgcgtgcagaaaGTTAATAGTTGGCGCTAG
Protein Sequence: MSDLKACRICLWKGVKLYHWDSFHLKQYYEEIMAKKVNERDGLPNYFCYECAAILYKFHKFKEKCWMGENALQELLWSGPITLSSITQIYREDKDLQSPIGIISVSNRVKTQLVKHKTLANNQPKETKIDETTENKVGYESENSLDDKNLEYKSEITTVNDCTEDEKTNIEVLIEDKAMPDDVEDGRNFSDHDELWPESTDDAAKPDIKEEINNEITVTEQSNLITEQSESNNETVPNNNHKRKKNKATSKDSLNKKAKKYEVVVGSVKSNYLDPKHWLKIKLTEDNAMVEFKERAQDRKYLAAAHKCTDCYKGFSKEDMLNRHIKLRHDESLGPIECRFCKMRFKWKCHLSQHIKQHLTKFKCLRCELTCPLETTAQFHNEYHNGVIRKCTHCGDEFRHLSTYYTHLRTHRSEHVCTLCGASFVSAVGLRLHKKTMHVNTVITPEEDSNTYCNRCDIKFETLKAYEEHVFHSAKHAEGVEDLVSEIPAPSLPKRRKNIFRRPERKITSCPICNKNFPSQTAYIKHHTAEHKDNPLPSKEEERHICEICGTSLAAGSVASHLNTHTREKIYTCSTCNMQFNSKSSMTRHQLTHTEEKPVQCSMCEKRFKQKSSMKLHFRTFHLKEPYPKRNRRKNADIQQELEDFRINQEDSEENLHADRIAMLRVQKVNSWR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00043996;
90% Identity: iTF_00040271;
80% Identity: -