Basic Information

Insect: Agrotis clavis
Gene Symbol: pol
Assembly: GCA_954870645.1
Location: OX940944.1:1207605-1233487[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0019 0.23 13.4 6.5 1 23 1122 1144 1122 1144 0.98

2 8 0.17 22 7.2 1.3 1 23 1151 1173 1151 1173 0.96

3 8 4.7e-06 0.00058 21.6 0.4 2 23 1216 1237 1216 1237 0.98

4 8 4.7e-05 0.0057 18.5 4.7 1 23 1243 1265 1243 1265 0.99

5 8 0.023 2.8 10.0 0.1 1 23 1280 1303 1280 1303 0.95

6 8 0.09 11 8.1 0.5 1 19 1309 1327 1309 1332 0.95

7 8 1e-05 0.0013 20.5 1.0 1 23 1341 1363 1341 1363 0.98

8 8 0.00048 0.059 15.3 0.9 1 23 1369 1392 1369 1392 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0019	0.23	13.4	6.5	1	23	1122	1144	1122	1144	0.98
2	8	0.17	22	7.2	1.3	1	23	1151	1173	1151	1173	0.96
3	8	4.7e-06	0.00058	21.6	0.4	2	23	1216	1237	1216	1237	0.98
4	8	4.7e-05	0.0057	18.5	4.7	1	23	1243	1265	1243	1265	0.99
5	8	0.023	2.8	10.0	0.1	1	23	1280	1303	1280	1303	0.95
6	8	0.09	11	8.1	0.5	1	19	1309	1327	1309	1332	0.95
7	8	1e-05	0.0013	20.5	1.0	1	23	1341	1363	1341	1363	0.98
8	8	0.00048	0.059	15.3	0.9	1	23	1369	1392	1369	1392	0.95

Sequence Information

Coding Sequence: ATGCGACGTGCTTACAGTTGGCGATTCATGGTTGCAACAGTTAGTAGGCCGATAATTGGCGCTGACTTTTTGCACCACCACGCACTGATGGTGGATCTCCATGGAAGACGGTTGGTGGATAAAAGAACCAATTTATCGGTACGAGGTTTCCTATCACCCACACACGAAGGAAGCATCCGAACCATCGACGACAAGCTTCCCTATCACGACCTGTTGGCCAAGTTCCCAGACATCACAAgaccaaacttaaataaactGGGAAATAGTGAAGTCGAACACTACATCGAAACTACCGGCCCGCCGATTTTTACAAATGCGAGACCACTACCGCCACATAAATATAATGCCGCGAAACAAGAATTTCAACTCATGATGAAACAAGGAATTTGTCAACCATCAAATAGCCCATGGGCTAGTCCTTTACACATGGTTTTGAAAAAGGATGGTACCTACAGAACCTGTGGCGATTACCGTAGACTCAACGCGGTAACCACGCCCGATCGATACCCAGTACCACGACTGCATGACTTCACACATAACCTACAAGGCAAGAAGATCTTCTCAAAAATTGACCTACAGAAGGCGTACTATCAGATTAAAAACAGAGAAGAAGACGTTAAGAAGACAGCCGTGATTACACCCTTTGGATTGTACGAGTTTACAAGAATGTGTTTTGGTTTGAGGAATGCAGGCCAAACATTCCAACGTCATATTGACAACGTGCTTCGTGGTTTGCCTGTTTTCCCATTCGTCGATGATATTCTCGTAGCTTCTGAGAACCAAGAAGTACACAGAAGAGAGCTTGAAGAAGTGTTTAAGCGACTCAACGagagtggtttaaaaataaacgtcGCTAAGTGTATCTTCGGCCAGTCAAAACTCGATTTCCTGGGATACACAATTAGTCCAGAAGGCATTACACCGACGGAAGAAAAGGTACAAGCAATCCAGTCCTACCCGTTACCAAAAACGATCCAAGACCTACGCCGTTTCATCGGGATTCTGAACTTTTATCGTTCCAGTATACCCCATGCGGCTGAACATCAAAAAGAATTAAGTAAATACTTTCACAACGCCAAGAAAAACGACAAAACAACCATACAATGGACAGAAGAGGCAAAAGAAGCATTCAATCAATGTAAACAAGATATCAAGAATTGCGCAATGTTATCCTATCCATCACTGAGCGAACCTTTCGCAATGATGACAGACGCTTCAAATACATGTGCTGGTGCCGTCATACAACAAAAGATCAACGGCAAGTGGAGACCACTGggatttttctccaagaaattcAGTGACGCACAACAAAAATACAGCACCTACGACCGTGAGTTGCTATCAATATACATGGCAATACGTCACTTTCGTCGTGTATTTGAAGGAAGAGAATTAATCGTTTACACGGACCACAAACCGCTGTGTAACGCATTAACTTCAAACAGCAAGTCTGAGACACCCCGCCGAACAAGATACCTTGAATATATCGGACAGTTTACGTCAAATATTCAACACGTAAACGGCAAGGACAACAAGGTCGCAGACGCACTATCACGCGTTGAAACAATAACATGCCCGACACCACTAGATTACACCGAGTTAGCAGAAAAACAAGACCAAGACGAAGAATTAAATGtacttttaaacaaaggaaAGTACATATTCAAGAAGATCGCCATTCCCAACTCAACCGCCAAACCCGTTACCTGCGAGATGTCATCAAGCACCGCTCGTCCATACCTGCCACACGATTTTAGAAAAGTAGCATTCAGAGCTATTCACGACCTTAGCCACCCTGGCATAAGGGCGACAAGGAAACTAGTCACTGCCCGCTACTGGTGGCCCTCGATGAATAGTGACGTAAATGAGTGGACTCGAACATGCGACGCGTGCCAGCGTGCTAAGGTGCAACAACACACGAAGGCACCTATTGCAAGTTTCCAACAAGCAAACAGACTGGAGCACGTGCACATAGATATCGTTGGCCCGTTACCTATCTCTGACGGTTTTCGATACCTATTGACCATGATAGACAGAGCTACCAAATGGCCTGAAGCACTCCCATTGGAAGATATAACCGCAGAAAAGGTCGCTAACGCATTTTACGAAGGTTGGATTGCGAGATTCGGTTGCCCAGTAACCATAACCACAGACCAAGGAAGACAATTTGAGTCCGATCTATTTAATAAATTGATGCAACGCATGGGAATTCACCGCACCCGCACCACTGCTTACCACCCGCAGTGCAATGGCGTGATAGAACGATGGCACCGTTCACTAAAAACATCACTCACCGCTAGACTCCAATCCACAACATGGTCGCATGAGCTACCTACAGTGCTGCTGGGACTACGCGCTTCAATAAAAGAAGATGTAGGTGCAAGTACCGCTGAATTATTATATGGCCAAACTCTGCGATTACCAGGAGAATTCTATGAAGAATCAACAAAACATAGCGATACAATATCTAACTTCATGAACAAGCTGAATGGAGCATTAAAGAAGGCCCAGGCGCAACGAAAATCTAACCAAACCCGAGCGACATTTATTCACGACGATCTTTATAAATGTTCGCATGTTTACCTACGCAATGACGCATCAAGTAAACCTCTGACGCCGACCTACACTGGCCCGCATAAAGTAATTAGTCGTAATGAGAAATACTTCACTATCCAGTTACGCAATAGATGCACCAACATCACTGTTGACAGACTAAAGCCAGCTTTCCAGATGAATACTGAGTCAGAAGCACCAGTCACAGACACGCCTGCATACGTCACAAGATCAGGAAGGACATCAAAGCCCTGCTTCCCGATTGAGGCTCAAGATGAAGAGTTATCAAAGTATGCCAGCCCGCACCTCAGTACCACAAGCATACTGACCATTGACATTGTTGGTAGAGGGAAGTCCGGCTACCAGCAAGTCTTGGAGCATGAGAAACAAGTTCAACCTTCAGGATTAGACGACGTAGatatacaaataataaacaaaatggaTGATGAATTTGTGAAAGAAGAAAATGGATTCTCAGACTACGAAGATAATATTACTTTAGAAGAATTTAGATCTGTAGCAACAAAAATAACAGAGGATGATATCGCCTCGCTACTAGATACTGGATCAGTAGAGATAAAGGAGGAACCGATCGTGAAGAAGAGGAAGAATAAGACTAAGGATGTTAGggtgaagaagaaaaaaaaattgattGATATATCTCCTGATGATGGTAATATGGTAGAAATTAAGTCTTCAATAAGGAAGCCAATGGAATTAGACCCAACAAAAATTAGAATAGTTACTTTGAATCCTGAAGAACAGATCAAACAAAGAGAGGAAGAAAGCAAAGCTGGATTAAAATTCCCCTTCCATTGTAACTTGTGCCATAAAGGTTTCAATTTTGAGTCCAAATTACAGAATCATATGAGCAAACATAGTCCGTCCCGCGGTCCTTACGAATGCAAGATATGTCGGATGCACCTCCCGACTTCATACAGCTTCAGTGTGCATTCTCTGATACATAACAGACGGTATGAGTGCGTCACGTGCGGACGACGGATGATCGATAGAGCATCTATTATAGATCATTATAGTAACAATAAAACTCACCGCGGCCACATGAGGAACCACCACGGCGGCGACCGACCCAAGTGTGAACAGTGCGGGAAGACATTCATCAACAAGGACTCCTTAGTAGAACATCAACAAATCCACCAAGGCATTAAGAACTATGAATGCTCGATATGCAACAAGCGTTTCAGAACGAGGACCCAGATCAAACATCATCAGCTCACGCACACCGACGTCAAGGAGTACTACTGTGTGGAGTGTGACGTCAGGTTCCAATGTCCCCGTTGTCCGCTCCGCTTCCCGTCCGTGCGCACGATGGAGGCGCACGTGTCGGTGCAGCACGACGGCGTGCGCGCGCACGTGTGCGGGGAGTGCGGGGCCGCGCTCGCGACCAGGTCCTCGCTCAGCAAGCACTGCACCGCCGTGCACCGCGGACAGCGACCGCCGCCGCGGCATGTGTGTGACACCTGTGGGAAGGCATTCCGGGGTAAGAGTGTGCTAACGAACCACGTACGTACTCACACGGGTGAGAAGCCGTTCTCATGCGAGTCATGCGGGCGACGCTTCACCCAGCGCACCGCCATGAGGACACATGTCAAACTCGTACATCTCAAACTGCCCCGGACTGCCAAGATAAAACCGGAGGTCTCACTAGAGATGCCGTCTCCAAAGCAAGATGTGTTCAAACCCGAGCCTATAGGAGAGCCGTGGAGACAGCCTTGTGAGGTCTACTTCCAAGTCACCGCAGGACCTTGA
Protein Sequence: MRRAYSWRFMVATVSRPIIGADFLHHHALMVDLHGRRLVDKRTNLSVRGFLSPTHEGSIRTIDDKLPYHDLLAKFPDITRPNLNKLGNSEVEHYIETTGPPIFTNARPLPPHKYNAAKQEFQLMMKQGICQPSNSPWASPLHMVLKKDGTYRTCGDYRRLNAVTTPDRYPVPRLHDFTHNLQGKKIFSKIDLQKAYYQIKNREEDVKKTAVITPFGLYEFTRMCFGLRNAGQTFQRHIDNVLRGLPVFPFVDDILVASENQEVHRRELEEVFKRLNESGLKINVAKCIFGQSKLDFLGYTISPEGITPTEEKVQAIQSYPLPKTIQDLRRFIGILNFYRSSIPHAAEHQKELSKYFHNAKKNDKTTIQWTEEAKEAFNQCKQDIKNCAMLSYPSLSEPFAMMTDASNTCAGAVIQQKINGKWRPLGFFSKKFSDAQQKYSTYDRELLSIYMAIRHFRRVFEGRELIVYTDHKPLCNALTSNSKSETPRRTRYLEYIGQFTSNIQHVNGKDNKVADALSRVETITCPTPLDYTELAEKQDQDEELNVLLNKGKYIFKKIAIPNSTAKPVTCEMSSSTARPYLPHDFRKVAFRAIHDLSHPGIRATRKLVTARYWWPSMNSDVNEWTRTCDACQRAKVQQHTKAPIASFQQANRLEHVHIDIVGPLPISDGFRYLLTMIDRATKWPEALPLEDITAEKVANAFYEGWIARFGCPVTITTDQGRQFESDLFNKLMQRMGIHRTRTTAYHPQCNGVIERWHRSLKTSLTARLQSTTWSHELPTVLLGLRASIKEDVGASTAELLYGQTLRLPGEFYEESTKHSDTISNFMNKLNGALKKAQAQRKSNQTRATFIHDDLYKCSHVYLRNDASSKPLTPTYTGPHKVISRNEKYFTIQLRNRCTNITVDRLKPAFQMNTESEAPVTDTPAYVTRSGRTSKPCFPIEAQDEELSKYASPHLSTTSILTIDIVGRGKSGYQQVLEHEKQVQPSGLDDVDIQIINKMDDEFVKEENGFSDYEDNITLEEFRSVATKITEDDIASLLDTGSVEIKEEPIVKKRKNKTKDVRVKKKKKLIDISPDDGNMVEIKSSIRKPMELDPTKIRIVTLNPEEQIKQREEESKAGLKFPFHCNLCHKGFNFESKLQNHMSKHSPSRGPYECKICRMHLPTSYSFSVHSLIHNRRYECVTCGRRMIDRASIIDHYSNNKTHRGHMRNHHGGDRPKCEQCGKTFINKDSLVEHQQIHQGIKNYECSICNKRFRTRTQIKHHQLTHTDVKEYYCVECDVRFQCPRCPLRFPSVRTMEAHVSVQHDGVRAHVCGECGAALATRSSLSKHCTAVHRGQRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFSCESCGRRFTQRTAMRTHVKLVHLKLPRTAKIKPEVSLEMPSPKQDVFKPEPIGEPWRQPCEVYFQVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -