Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940940.1:7196435-7197595[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.079 9.8 8.3 6.5 1 23 164 188 164 188 0.92

2 7 1.5 1.8e+02 4.3 0.1 2 23 194 214 193 214 0.91

3 7 4e-06 0.00049 21.8 2.3 1 23 220 242 220 242 0.98

4 7 7.7e-05 0.0095 17.8 1.6 1 23 248 270 248 270 0.99

5 7 1.5e-05 0.0018 20.0 2.2 1 23 276 298 276 298 0.98

6 7 2.7e-05 0.0033 19.2 0.3 2 23 305 327 304 327 0.96

7 7 3.8e-05 0.0047 18.7 0.4 3 23 335 356 333 356 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.079	9.8	8.3	6.5	1	23	164	188	164	188	0.92
2	7	1.5	1.8e+02	4.3	0.1	2	23	194	214	193	214	0.91
3	7	4e-06	0.00049	21.8	2.3	1	23	220	242	220	242	0.98
4	7	7.7e-05	0.0095	17.8	1.6	1	23	248	270	248	270	0.99
5	7	1.5e-05	0.0018	20.0	2.2	1	23	276	298	276	298	0.98
6	7	2.7e-05	0.0033	19.2	0.3	2	23	305	327	304	327	0.96
7	7	3.8e-05	0.0047	18.7	0.4	3	23	335	356	333	356	0.96

Sequence Information

Coding Sequence: ATGTCGCTGTCATTGTTACTGCTAAAAATGTTACATTGCAAGGAGATGCAAGCTAGAAGAAGGAGAAGAAAGGTACGAGATGATTCAGCCTGCAGTACATCACACGAAGAAAACTCACGAAAAGATACAATTTTAGAGAAGGAACAGAAACACGAAAACGTGTGTAGAGTTTGCCTCAAAGAAGGCTGCATACCAATCTATGGGAACAACACAGAACAAGACCTTTCCGAGTCGTTTAAAATATTTGCCGGTGTAGAGATGACAATAGATGATCCGTATCCCAAATACTTATGCACGGCATGCAATGACCTTCTTCAAGGAGCAATACAATTTAGGAATACAGCACAACAATcagataaaattttaaaaaatcctcCAGAAGAACAGACTACGAGAACTGATACTGATAATGATGACTATTACCCTGAGGATGATGGCAACTCTTCAGAAAATTATGAAGAAAACAAAAGCAGCATAAAGAAGTCGTCCTATCACTGTAAAAAATGTGACTTAACATTTGACACATTCCATGACTACCATGACCACAGATTGACTGAGGAAcatgaaaataagaaaataccATGTCCTGTCTGCAACAACTTGTACACagaaatgtattttaaaaagCATTTAGCAATACATAAAGACAAGGGTTCATTCATGTGCGATATTTGTGGGAAAAACTTCATAATGCAAGGACACTTCACTCGTCATCGCCTTACACATTTTTACAAACTACCCTTCAAATGTTCTCTATGTCCATATAGAGGCAGATTCAGTGAATCACTGAAAATGCACATGCGGACCCACACTGGAGAAAAGCCATACCAATGTTCACAATGTCCATCcagatttataaataaaagtaatttgaACAAACACTTTTTAAGACATACTGGAGAATATACTTTAAAGTGTGATACTTGTGGCCGAGGGTTTtattataaacgagaattaGAGTTACATATCAAAGTAGATCACACAGGGATAAAGGATCAGATTTGTAACATTTGTGGAAAGGCATTTGGGTATAGGAAACAGATGATGAAGCATCAACTCAGAGTACATAAAAGAGCAAAACTAAAGAGCGGCAGAATGCCTTTGTATTTGCAAGTGGAAACCATGAAGGAACAAGGTCAAGATGTTTCTAATGAGGGTTAA
Protein Sequence: MSLSLLLLKMLHCKEMQARRRRRKVRDDSACSTSHEENSRKDTILEKEQKHENVCRVCLKEGCIPIYGNNTEQDLSESFKIFAGVEMTIDDPYPKYLCTACNDLLQGAIQFRNTAQQSDKILKNPPEEQTTRTDTDNDDYYPEDDGNSSENYEENKSSIKKSSYHCKKCDLTFDTFHDYHDHRLTEEHENKKIPCPVCNNLYTEMYFKKHLAIHKDKGSFMCDICGKNFIMQGHFTRHRLTHFYKLPFKCSLCPYRGRFSESLKMHMRTHTGEKPYQCSQCPSRFINKSNLNKHFLRHTGEYTLKCDTCGRGFYYKRELELHIKVDHTGIKDQICNICGKAFGYRKQMMKHQLRVHKRAKLKSGRMPLYLQVETMKEQGQDVSNEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00042968;
90% Identity: iTF_00041222;
80% Identity: -