Acla042115.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940944.1:7649227-7659468[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.027 3.4 9.7 1.0 1 23 270 293 270 293 0.97 2 10 0.00034 0.042 15.7 1.8 1 23 300 322 300 322 0.98 3 10 0.038 4.7 9.3 0.9 3 23 359 380 357 380 0.95 4 10 0.0019 0.23 13.4 0.9 3 23 384 405 382 405 0.96 5 10 1.2e-05 0.0015 20.3 1.3 1 23 411 433 411 433 0.98 6 10 2.4 2.9e+02 3.6 0.1 2 12 443 453 442 463 0.81 7 10 2.2e-05 0.0027 19.5 4.4 1 23 471 493 471 494 0.95 8 10 3.1e-06 0.00039 22.1 1.2 1 23 500 522 500 522 0.98 9 10 0.00049 0.061 15.2 3.1 1 23 531 553 531 553 0.97 10 10 0.00018 0.022 16.6 1.2 1 23 559 582 559 582 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCACAAGTAAATATATGTATGACATGTCTAAGCAGAAACCGCCGTCTAATACCTGTGCATACTTTATCAACATTGCTACAAGAAATTCGTTTCGAGGAGCTTGAAGTCTCCCATAACCAAGTATGTTGGGAATGCTGTAACATCCTGAAAAAATTCTACAAGTTTAAGAAGAGAGCTATATTGGCACAGGAAATCTTATCAAACAGAACAGAGCATTCCAATATAAAATCTTTAACAACGCTTTCCAAAACCCAAGTAATTTTGTGTAACTGTAATTACACATACAACTgtgaaacaaatttaaaaattgaCCATTGTTGTATAAAAGAAGAAAATTTTGATcataatgatgatgatatagACCAAATTGATGAACACATGGACAAAAATGATGAACACATGGATATAAATGATCAACTCATAGACCAAAATGATGAACACACAGACCAAACTGAAGATACTTTAGATATTAATAGAAGTCCAGTCGCAAAAGCTGATAGAAAGGACAATGTGTATACTGAAGTAGACATAATAgataataaacataatattaataacttagtaaaacaagaaaaatattttcaacataaaaataaaagttttgacgACATTAATCATGTACTTAACGAACAAACCGAAGATTTAGAAACTACAGACTCGAAAcccaacaaaaaaatacttataaaagATACAGATGATGAAGAATTTCTAGAGAAATTCGTACAAGATATTTTGACTGAGGAAGAGATGGAACAAGGCAGAGAAGAGAGAAGGAATCATCCTTCATTTAGATCATTGCCTTTTATATGCAAAGGTTGTCTGCTCGGGTTTAGAAAGGAAGTGAAATATAGAATTCATATCAAGAAGAAGCATGATGAGCACATCGGTAACTTTATCTGCGATATATGTACTATCAGATTCCCTCACAACTTAGCTTTGAACAAACATAAAAGGAAGCACTATGTAGTTTATAGATGTAAGCTATGTAAATATCAGGGTAATAACCTGCGATCGGCTGTGAACCATTGTAAAATCAAACATGCGGATGATAAGCCGGATAGTATACATTGCATGCAGTGTAAGTTCATTGccaaAAACTCCGAAGATTTAGAACAACACATGCAATCTGAACATCGATTTTGGTGTAATGAGTGTGGTGAAAAATTTACCTTGAAGAAGAATATTAGGATACATTTGACacGAACACACAATTCAATACGGGCTTTCAAATGCGAAATATGCAAAAAgggatttaaaacaaatatgcgGTTGGAATCGCATATGGCGCGCCACAATGAAAGCCTTGCCAAAAAACTATCGTATTGTGAAGAGTGCGATATACAATTTAAGACAATACTAATATACAGAACACATTTAAAGAATAATTCCAACCATTCTGAGGGatattcatGTCCGGAGTGCAATAAGAAGTTCAAAGGAAAAAGTTACTTGAAGCAACATTATGATTACCATCATTTACATAGATCTCGGTACAAATGTGAAGTGTGCAATAAGACTTTCATGTCAAAATCAGAGTTAAATATTCACAAAGCTAAACATCTCGGTAAAGATAGACCGAGAAAATACTCCTGCTATATTTGTTCCAAGAAATTCTTTAACTCCCAAATGCTCCGAAACCATCAGTTCATACATACAGACGAAAGACAATTTATGTGCGAAGATTGTGGCGACACGTTCAAGCAAAAAGCGACCTTATATACACACACACGATTGAAACATAAAGGTTGGAAAAGAAGGAAGCGAGAGAGTTGA
- Protein Sequence
- MEAQVNICMTCLSRNRRLIPVHTLSTLLQEIRFEELEVSHNQVCWECCNILKKFYKFKKRAILAQEILSNRTEHSNIKSLTTLSKTQVILCNCNYTYNCETNLKIDHCCIKEENFDHNDDDIDQIDEHMDKNDEHMDINDQLIDQNDEHTDQTEDTLDINRSPVAKADRKDNVYTEVDIIDNKHNINNLVKQEKYFQHKNKSFDDINHVLNEQTEDLETTDSKPNKKILIKDTDDEEFLEKFVQDILTEEEMEQGREERRNHPSFRSLPFICKGCLLGFRKEVKYRIHIKKKHDEHIGNFICDICTIRFPHNLALNKHKRKHYVVYRCKLCKYQGNNLRSAVNHCKIKHADDKPDSIHCMQCKFIAKNSEDLEQHMQSEHRFWCNECGEKFTLKKNIRIHLTRTHNSIRAFKCEICKKGFKTNMRLESHMARHNESLAKKLSYCEECDIQFKTILIYRTHLKNNSNHSEGYSCPECNKKFKGKSYLKQHYDYHHLHRSRYKCEVCNKTFMSKSELNIHKAKHLGKDRPRKYSCYICSKKFFNSQMLRNHQFIHTDERQFMCEDCGDTFKQKATLYTHTRLKHKGWKRRKRES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -