Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940946.1:6811915-6815859[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.19 24 7.1 0.1 2 23 19 41 18 41 0.95

2 17 0.1 12 8.0 2.0 1 23 63 85 63 85 0.98

3 17 4.7e-05 0.0058 18.4 0.6 1 23 89 111 89 111 0.98

4 17 0.4 49 6.1 1.6 1 13 116 128 116 131 0.90

5 17 0.015 1.9 10.5 4.3 2 23 147 169 146 169 0.95

6 17 0.0001 0.013 17.3 2.3 2 23 177 199 176 199 0.95

7 17 0.001 0.13 14.2 3.5 2 23 206 227 206 227 0.97

8 17 0.74 91 5.2 1.4 1 23 318 341 318 341 0.95

9 17 0.84 1e+02 5.1 0.1 2 23 368 390 367 390 0.93

10 17 0.16 20 7.3 1.4 2 23 413 434 412 434 0.92

11 17 0.00012 0.015 17.1 0.1 1 23 438 460 438 460 0.97

12 17 0.043 5.3 9.1 3.1 1 23 465 488 465 488 0.97

13 17 3.6 4.4e+02 3.1 1.2 2 21 494 513 493 516 0.75

14 17 9.3e-05 0.012 17.5 0.4 2 23 525 547 524 547 0.96

15 17 0.002 0.25 13.3 0.6 1 23 553 575 553 575 0.98

16 17 0.0063 0.77 11.8 2.3 1 23 581 603 581 603 0.98

17 17 0.00023 0.028 16.3 2.9 1 23 609 632 609 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.19	24	7.1	0.1	2	23	19	41	18	41	0.95
2	17	0.1	12	8.0	2.0	1	23	63	85	63	85	0.98
3	17	4.7e-05	0.0058	18.4	0.6	1	23	89	111	89	111	0.98
4	17	0.4	49	6.1	1.6	1	13	116	128	116	131	0.90
5	17	0.015	1.9	10.5	4.3	2	23	147	169	146	169	0.95
6	17	0.0001	0.013	17.3	2.3	2	23	177	199	176	199	0.95
7	17	0.001	0.13	14.2	3.5	2	23	206	227	206	227	0.97
8	17	0.74	91	5.2	1.4	1	23	318	341	318	341	0.95
9	17	0.84	1e+02	5.1	0.1	2	23	368	390	367	390	0.93
10	17	0.16	20	7.3	1.4	2	23	413	434	412	434	0.92
11	17	0.00012	0.015	17.1	0.1	1	23	438	460	438	460	0.97
12	17	0.043	5.3	9.1	3.1	1	23	465	488	465	488	0.97
13	17	3.6	4.4e+02	3.1	1.2	2	21	494	513	493	516	0.75
14	17	9.3e-05	0.012	17.5	0.4	2	23	525	547	524	547	0.96
15	17	0.002	0.25	13.3	0.6	1	23	553	575	553	575	0.98
16	17	0.0063	0.77	11.8	2.3	1	23	581	603	581	603	0.98
17	17	0.00023	0.028	16.3	2.9	1	23	609	632	609	632	0.98

Sequence Information

Coding Sequence: ATGAACGGTCAATCTTTAAGTGCCTATGTCGTTAAAATAGACATAACTGGTCTGAAATGTGAAATATGCAAAGAAGATATTGATGGATTAGAGCAACTGATGAATCATTTGCAATCTGaacataaaataatgatataCACAGATATCAATAATCATATTCTACCTTTTAATCTAGAAGAAGACTCATTTAAATGCGTGCTATGCCCTAAAATCTACGAGTGTTTTAAGCTGCTGCAAGAACACATGAACTCacattacaataattataactgTGAAACCTGCAATGCTCCTTTCGTAAATAAGAGAACCCTTAAAAGCCATATGGCTCGACATAAAAAGGGCGAATTCTCTTGTTCGTTTTGTCCAAAAGTATTTGATACGAATGGCAAAAAGTTATGTCACGAAAAATGTGTACACATCGGAGATCATAAAAGAAACAAATGTCCGCATTGCCACGAGAAATTCACGACTTACGCAAAGAAAAACGAGCATATGGTAAAGGAGCATGGTGCAAGCCCTCGTATCCTCAAATGTTTAGCATGTGACAAGACCTTCACAAGAAGAGACAGATTAACTCGACACACAAAACGGGATCACTTAATGGAACGTAAAAATGAATGCAAGCATTGTGACATGAAATTTTTTGGAAAGAAAGAACTGACTATGCACATGTTAAAACACACAGGTCGAAGGGAAGCGGCAGAACTTGCCAAGAAATTGCAATCCGAGATCAAAGAACGTCTGATTGCACAAGCAGAAACAGCACGTACAATATCAAAGAAAGATACTAGCAGAGGCAACTCTCAATCGGACACTGACAAAGACGGCAGCAAAATTAAGGGAAAGAGTAAAAAGCAAAAAAGCGAGGAGGAGTTGTTTAAACAACGTTATAATATTAGAGAGATTCTACTATGTAGCAATGCGACGCCGATTCGTAAGTATGATCTCGGATACGTGTGCTGTTTCTGTGATAACCAATACCCTGATTCTGAAGATCTAAAGTTCCATACCATTACAGAACACGATGATAGTGACAAACTAGACTTTATGAAGAGACAGTGCGCCAAATCCTTCTTGGTCAAACTAGATATTACAGCACTGAAGTGTACTTTGTGCGACACTGATATCGATTCGGACGTGGACCTCATCCAACATCTTAAGGACGAACATGGAAAGCCAATGTTTACAGATATAAAGAATTATATCATACCATTCATGTTCGAAGACTCTACACTGAAGTGCATTTTCTGTTCACGAATTTTCAACAGATTCAAAGTTTTACAAGAACACATGTATACTCACTACAGAAACTTTGTCTGTGACGTATGTGGCACTGGGTTTGTTAATAAAAACATGCTGATCTCGCACAGTAACAGTCATAAAGTAGGAATTTTCAAATGCGGACATTGTACCGAAGAATTTGACACTCCAAGAAAAAGGAAATACCATGAAAAGACTGTTCACTTGTTAGCTTTAAACAAATGTGGGTATTGTGATGAAAAGTTTATGTGGTATAGACAGAAATGTGCTCATATGGCAGAAGTTCATGGCATTGTTGTAACTCAACCGAAAGAGTGTAAAGCGTGCGACAAAGTCTTCCCTTCTGAGTCTAAACTCCAACTTCACGTTAGGAGGGATCACTTATTGGAACGTAGATACAAATGCACGGAATGTGAAATGGAGTTCTTTGCCAAAGAAATGTTAAGCAACCATATGGTCAAACACACAGGGATCAAAATGTTTTCCTGTAATGTTTGCTGCAAATCCTACGGGCTGAAGAAAGCTTTGAGAGAGCACATGAGGATACATGAGAATGACAAGAGATTCAAGTGCGACACATGTGATCAGGCGTTCGTTCAGAAGTGCAGCTGGAAGGGACATATGCGTTCTAAGCATGGAATTACAGTATGA
Protein Sequence: MNGQSLSAYVVKIDITGLKCEICKEDIDGLEQLMNHLQSEHKIMIYTDINNHILPFNLEEDSFKCVLCPKIYECFKLLQEHMNSHYNNYNCETCNAPFVNKRTLKSHMARHKKGEFSCSFCPKVFDTNGKKLCHEKCVHIGDHKRNKCPHCHEKFTTYAKKNEHMVKEHGASPRILKCLACDKTFTRRDRLTRHTKRDHLMERKNECKHCDMKFFGKKELTMHMLKHTGRREAAELAKKLQSEIKERLIAQAETARTISKKDTSRGNSQSDTDKDGSKIKGKSKKQKSEEELFKQRYNIREILLCSNATPIRKYDLGYVCCFCDNQYPDSEDLKFHTITEHDDSDKLDFMKRQCAKSFLVKLDITALKCTLCDTDIDSDVDLIQHLKDEHGKPMFTDIKNYIIPFMFEDSTLKCIFCSRIFNRFKVLQEHMYTHYRNFVCDVCGTGFVNKNMLISHSNSHKVGIFKCGHCTEEFDTPRKRKYHEKTVHLLALNKCGYCDEKFMWYRQKCAHMAEVHGIVVTQPKECKACDKVFPSESKLQLHVRRDHLLERRYKCTECEMEFFAKEMLSNHMVKHTGIKMFSCNVCCKSYGLKKALREHMRIHENDKRFKCDTCDQAFVQKCSWKGHMRSKHGITV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -