Acla029050.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrotis clavis
Gene Symbol
-
Assembly
GCA_954870645.1
Location
OX940934.1:5344510-5369711[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0026 0.33 12.9 2.6 3 23 242 262 240 262 0.97
2 11 0.015 1.8 10.6 9.9 1 23 268 290 268 290 0.95
3 11 6.9e-05 0.0085 17.9 7.2 1 23 296 318 296 318 0.99
4 11 0.00051 0.063 15.2 1.5 1 23 324 346 324 346 0.97
5 11 1.1e-05 0.0013 20.5 0.9 1 23 352 374 352 374 0.97
6 11 8.7e-07 0.00011 23.9 0.2 1 23 380 402 380 402 0.98
7 11 0.00021 0.026 16.4 0.7 1 23 407 429 407 429 0.96
8 11 3.8 4.7e+02 3.0 2.4 5 19 439 453 436 459 0.87
9 11 4e-05 0.005 18.6 0.4 1 23 561 583 561 583 0.97
10 11 0.00011 0.013 17.3 1.4 1 23 651 673 651 673 0.96
11 11 4.3e-05 0.0053 18.6 4.3 1 23 683 705 683 705 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACTCCTAACAATGTCCCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCTGCGGACCTTACGAAGGGTGAAGTGGAAACACCGAGTAGTCTGAGCTATACTTTGGGCAATACGGTGTCCCCAGAAACGACACTAACTGTTATGTCCCACAAAACACCACAAGTACAAGAAAAAGTAGGTTCAGTCACCGTAGCCGTATCTAACGCTGGTGCCCAACTTACGAGGGTGGTAACAACAGGCACACCAGTGTCTGGGAGACGGATGTTTGTCGTCAACGATGCAGCTGCTCACACGTTGAATAGGGTGACACAACAGAATCAGACTACTACTATACATACGAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTGACTGCAGAAGAATGCAACGAGATATTGATGAAGAGGGCTCTGCAGGCCCAGGGCATCGCCACCCCGGTCATAGATGCGTCGCAGCTGAACCATACGATATTAAACGGAGGCCTGAAGAGTCTAGCGGAGGCGACGGCTCAGCAAACGCAGGCGGAGACGATTCAGACCACAACTGTACATCAGCATCATTTGTTACATACAAAGCAAGAGCCTGGAACTACCAATAATTCGCCCAAAACGGTATATTCGCAGACGGAGCTGATGAACACCAATTCGGTGATGACGACAGCGCCTCCCGCGGCGGTGAAGGAGCGTCCTTACGGCTGCGACGAGTGCGGCAAGTCGTTCCTGCTCAAACACCATCTTACGACCCATGCCAGAGTTCATACAGGTGAGCGACCGCACGCGTGCGTTCACTGCGACAAGACATTTGCGCACAAGCATTGTCTCAACACACATCTCTTACTGCACTCTTCTAATCGCCCGTACCGCTGCAACGAATGCAAGAAAACGTTCACGCTCAAACATCACCTACTCACACATACAAGGGTGCACAGTCGAGAGCGTCCGTTCGTGTGCAACGAGTGTGGTCGCGGCTTCCCGCTGAAGAGACACCTGGTGACGCACAGCAAGTACCACGCTGGAGAGCGGCCCTACGTATGTAGCGACTGCGGAGAGAGCTTCGCGCAGAAGGAGCACCTAGTGATGCACAGTCGTTTCCACGGCTCCCTGTCCCCGTACGTGTGTCCGGACTGCGGCGTGACGTTCACGCGCAAGTTCCAGCTCGTGAACCACGGCCGCGTGCACGGACGAGTGCCGCACGCGTGTCCCGTCTGCGGGAAGGAGTTCCTGCAGAGGAGGACGCTCGTCACGCATATGAAAATCCACACAGGAGAGGGTGCAGTAGCATGTATAGAATGTGGTGAAGCCTTCAAATGCAAGTCGGAGTTGCAGCAACATTGCAAAATGACGCGGCACTGTCTACAATCGACGCAATCAGCAGTAAGCAGTCAGCAGCAACAGCAACAACAGCAGCAgcagcaacaacaacaacagcagCAACAACAACAGCAACAACAAGCGCAACAACAAGCACAACAACAGGCGCAACAGCAAGCACAGCAACAAGCGCAGCAACAGCAACAACAACAGCAACAACAGCAGCAGCAGCAACAACAACAGCAACAAGCAACTGTGATAAAACAAGACGATTTTAAACCACAAATTGTACAGGTGATTGGAGCAGATGGGCATATAGTGTCGGAGAAATCAACGCCGGGATACGCATGTCCAGAGTGTGGCTCCTGTTTCAACACCAAGGAGGCCCTCTCCCTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGTGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGGCTGGTCGCCGCGCACACGCAGCACAGTTTCATACTCCCAGACCAACCAAACATACAGATAATTTCGTCGAACTCGAATAACGTTGGTCATACGCAAGTTATAGCAGCGAATCATCAAATCGCAGCCCCCAGACCGAAGGTTCACTTTTGTGGCGATTGCGGGAAGGGATTCGCGGCTAAACATGGCCTGCTTGCACATCAAAGAAGACACCCCGACGGCAGCTGTACTCTCCGCACGCACGTGTGCGACCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCACCTCATGCTCCATCAGAGACAGCACATGGACCTGCCGCCCCGCAGTCAAAATCAAGTGCAACCTGTAACGCAACAAGCGGCCCAACAGGCAGCGCAACAGGCGGCGCAACAGGCGCAGCAGGTGCAACAACAAGTGCAACAACAGGTACAACAACAGCAACAACACCAGCAACAGGTGCAACATCAGAATAGTTTGGAGTTGGAACAACAAGAACATCAGCAGGCCACGCATATACAAGTTGTAACAAATAGATCAGGTCAAGTGATCGGCAACCAGATAGTGGTGGGGTCCCTGGGCGGCACGCGGCGCCTGGTGACTCCGCTGCACATCGTGGGCCGGGACATCAAGCCCAACATCGCGCACCTCACGCACAAGCACCACGCCAGGCAACATACTACCAGCGGAGATGCGAAAGAAGTCGGCGGCCTAGTCCTCTCAGCAGGCCGGACAGGCCTCATCAAGTACGAGATCTCCCTCCCTCCCCCCACGTCCGTGGTGCAAGTACAACAGCTGGACTGA
Protein Sequence
MCMPTPNNVPGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGSVTVAVSNAGAQLTRVVTTGTPVSGRRMFVVNDAAAHTLNRVTQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATAQQTQAETIQTTTVHQHHLLHTKQEPGTTNNSPKTVYSQTELMNTNSVMTTAPPAAVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCDKTFAHKHCLNTHLLLHSSNRPYRCNECKKTFTLKHHLLTHTRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFTRKFQLVNHGRVHGRVPHACPVCGKEFLQRRTLVTHMKIHTGEGAVACIECGEAFKCKSELQQHCKMTRHCLQSTQSAVSSQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQQQQQATVIKQDDFKPQIVQVIGADGHIVSEKSTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHTQHSFILPDQPNIQIISSNSNNVGHTQVIAANHQIAAPRPKVHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSQNQVQPVTQQAAQQAAQQAAQQAQQVQQQVQQQVQQQQQHQQQVQHQNSLELEQQEHQQATHIQVVTNRSGQVIGNQIVVGSLGGTRRLVTPLHIVGRDIKPNIAHLTHKHHARQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01063076;
90% Identity
iTF_01062106;
80% Identity
-