Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940918.1:15178426-15189230[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.039 15.8 0.2 2 23 207 229 206 229 0.95

2 11 0.84 1e+02 5.1 0.2 6 23 239 256 237 256 0.92

3 11 8.5e-05 0.01 17.6 2.7 1 23 290 313 290 313 0.94

4 11 1.8 2.3e+02 4.0 1.0 5 23 322 340 320 340 0.94

5 11 0.00011 0.014 17.3 1.2 1 23 346 368 346 368 0.98

6 11 4.5e-06 0.00056 21.6 0.9 1 23 376 398 376 398 0.97

7 11 0.00012 0.015 17.1 0.7 1 23 407 430 407 430 0.98

8 11 0.00025 0.03 16.2 0.2 1 23 436 458 436 458 0.97

9 11 1.2e-06 0.00015 23.4 2.7 1 23 464 486 464 486 0.98

10 11 0.0012 0.15 14.0 1.0 1 23 491 513 491 513 0.98

11 11 8.6e-05 0.011 17.6 1.1 1 19 519 537 519 539 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.039	15.8	0.2	2	23	207	229	206	229	0.95
2	11	0.84	1e+02	5.1	0.2	6	23	239	256	237	256	0.92
3	11	8.5e-05	0.01	17.6	2.7	1	23	290	313	290	313	0.94
4	11	1.8	2.3e+02	4.0	1.0	5	23	322	340	320	340	0.94
5	11	0.00011	0.014	17.3	1.2	1	23	346	368	346	368	0.98
6	11	4.5e-06	0.00056	21.6	0.9	1	23	376	398	376	398	0.97
7	11	0.00012	0.015	17.1	0.7	1	23	407	430	407	430	0.98
8	11	0.00025	0.03	16.2	0.2	1	23	436	458	436	458	0.97
9	11	1.2e-06	0.00015	23.4	2.7	1	23	464	486	464	486	0.98
10	11	0.0012	0.15	14.0	1.0	1	23	491	513	491	513	0.98
11	11	8.6e-05	0.011	17.6	1.1	1	19	519	537	519	539	0.95

Sequence Information

Coding Sequence: ATGCCAATGAGCATGAGAGATTTGTGCAGATTATGCGCAAAGAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACTACAagatttcatacaaattattatCTTTGAGAACGACAATTTGCCAACGAAGATTTGCTTGAATTGTGAAGAAAAAATGGTGTCATTTCAGCTATTTGTCCTAGAATGTTATAAAACCCAAGACATTTTGAAGAAGATGTATGATGATAATTACGATCCTCATGACATTAAAGTGGAAGAACTACCGGGACCTGTTGATTTTAATGTCTCTATCAAATCTGAGGTAAAAGATGAAGTAACAACGGAAGATCTAGTTTGTGCACTGAATAATGAGGCAGCTTTATCAGTGATAGATGTTTTCTCCGATCCACATAGTGATCATAATGACGCTGATATACACAATGGTGATGATAttaatgatgatgaagatgatgactaCCTTGATAATATAGCCATAGCAGCTCTAAAACCTAAAATTATGCGCATCAGAAGAAGGGAGTTAACAGAAAAGGAGGCAGAAGAGTTTAAGCAAATCCTCAAAAAGCCTAATTTGAAAGCGAAAGATTTTATTAaaTTGCAGTGTGATTTCTGTGGACAAAAACTGAAAACATGGAGTGGTTTACGAGTACATTATGCCAAAGTGCATAAGAGCGCACCATTTGTCTACTGCCTGTGTGGTTATGTTGTAAGATCGAACAGTGTTCTTTACAAACATGTATCAGATCATAAGATTGAAAGTAGAAAATTATCAAATACCGAGGAATCTGAAgatgatgaaaaacaaaattataaatatgcAAGCTTGAATGTGAAAGATTTTATAAGGTTTAAATGTACGCAATGTGACAAGGAGTGTTCCAGCTGGTACAGTCTGAAGGCACATTCTGAGTCAAGTCACAGCATATCACCTGTGGTGTCTTGCATCTGTGGCATCACTCTCAAATCCAAGTCGGTTATGTATAAGCATATACATGACCATAGGAATCCCAATGTCTTTTCGTGTGACAAATGCCCCCGAATAACGAAAACCCTGTCTGCTTTAAATAAACATAAGATGCGACATATACCAATATCAGAAAGAAAATTCATTTGTTCCTCGtgtgataaaatatttactactAAGGATGCATTGAAATCTCATGAAAGATCGCACATACCGATAGAAGATCGTAAAATATATCGCTGTGATGTGTGTAACATGAAATTCACGACGCGGTCGTCGGCGGCGTCTCACAAGCGCGTGGTGCACGAGAAGATCAAGGGCTATGTATGTGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGGCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAGGAAGTGCTCCAAACCTTTCAAGACCTATTCGAATCTGAAGACGCACATGGACACTCACGAGGACACGTCATACGAGTGCTACATCTGCAGACGAATACTGAACAGTCGCCGCACGCTCCGCAAACATCTTCTGGTGCACGAGGACAAGTGCAGGCATGTCTGCTCTTACTGCAACAAGGCTTTCAAGAGGAGACAGACTTTGAAGGTACACAGTATAGGAATAACAACTTATTTATATTCAGGCTGA
Protein Sequence: MPMSMRDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIFENDNLPTKICLNCEEKMVSFQLFVLECYKTQDILKKMYDDNYDPHDIKVEELPGPVDFNVSIKSEVKDEVTTEDLVCALNNEAALSVIDVFSDPHSDHNDADIHNGDDINDDEDDDYLDNIAIAALKPKIMRIRRRELTEKEAEEFKQILKKPNLKAKDFIKLQCDFCGQKLKTWSGLRVHYAKVHKSAPFVYCLCGYVVRSNSVLYKHVSDHKIESRKLSNTEESEDDEKQNYKYASLNVKDFIRFKCTQCDKECSSWYSLKAHSESSHSISPVVSCICGITLKSKSVMYKHIHDHRNPNVFSCDKCPRITKTLSALNKHKMRHIPISERKFICSSCDKIFTTKDALKSHERSHIPIEDRKIYRCDVCNMKFTTRSSAASHKRVVHEKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYECYICRRILNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHSIGITTYLYSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029509;
90% Identity: iTF_00043790;
80% Identity: -