Acla043845.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- CG12744
- Assembly
- GCA_954870645.1
- Location
- OX940946.1:6787338-6790825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00019 0.023 16.5 0.1 1 23 16 39 16 39 0.94 2 15 0.12 15 7.7 0.1 2 23 68 90 67 90 0.94 3 15 0.12 15 7.7 4.9 2 23 113 134 112 134 0.96 4 15 0.00016 0.02 16.7 0.2 1 23 138 160 138 160 0.98 5 15 0.032 4 9.5 1.4 1 23 165 188 165 188 0.91 6 15 0.039 4.8 9.3 1.0 2 23 197 219 197 219 0.90 7 15 0.012 1.5 10.9 5.3 1 23 226 249 226 249 0.97 8 15 0.0047 0.59 12.1 2.1 1 23 313 336 313 336 0.96 9 15 8.5e-05 0.011 17.6 0.1 1 23 435 457 435 457 0.98 10 15 0.22 27 6.9 5.4 1 23 462 485 462 485 0.86 11 15 0.056 6.9 8.8 0.8 2 22 493 513 492 515 0.89 12 15 1.9e-05 0.0023 19.7 1.1 1 23 522 545 522 545 0.97 13 15 1.6e-06 0.0002 23.0 3.2 1 23 551 573 551 573 0.98 14 15 8.7e-05 0.011 17.6 0.7 1 23 579 601 579 601 0.99 15 15 7.4e-07 9.1e-05 24.1 1.4 1 23 607 629 607 629 0.99
Sequence Information
- Coding Sequence
- ATGTATTCTAACGCCACACCTATACAGCGTCGCGGAACCGTTGGATACGTATGCAGTTACTGCTTCGAAGAATACTCAGACCCTGCTGACCTAAAAAAGCACACACTGGCAGATCATAACAGACAAACAGACCCTACACTTGGATACCCTAAAATCGCGAGCTTTTCAGAATATTGTGTCAAACTGGATATCACTGACCTCAAGTGCACGAAATGCGCTAAGCCCATCGACAGCCTGGAAGATTTACTAACACATATCCAAGACGAGCATTACAAAAAGATTTACTCTGACATTCCAAATCATTTCATACCATTCAAATTTTCAACTGCAGATCTTACCTGCTGCCTCTGTGAGATGACTTTCGATAAGTTTAAACTACTGCAGGAGCATATGCATTCGCATTACAAGAACTACGTTTGTGAAGATTGCGGTTCTGGGTTTGTTACTCGGGGATCTTATTTGAGACATCGCATCAGACATGTAAAAGGAGACTTCCCTTGCAGCTTCTGTCCTAAAGTTTTCGACACGTTGGCGAAGAAGAAATCGCATGAGAAATTTAATCATATTAAAGCCCAAATGTATCCTAACCGATGTTTATATTGCGACAAAAGTTTTAAAGAATACTATCGCAAAGAAATGCACATGTCTGAAGTCCACGGTGTTAAATTAGCGTTGCACAAATGCAACGCTTGTGACAAAAGTTATAAAAACAAGTGTCGACTTCTGGTGCATGTGAAAAGAGACCATCTATTGGAGCGTAGATACAAATATGAGGAAGAAAAAGTGGAAGCAGCTACGGCAATTGTCATATCGTCGGATGATGAAGACATACTCATGAAATCTGAAAAGCATCTAATAAGCAAGCATTTCAAAAATCTGAATCTAATCCTAAAATTTTCGAATGCCACGATGATACACAAACAAACCGCCGAAGGATATTTTTGCAGCTATTGCTCGGAGCCTTTCATGCAACCCAAATGTTTGAAAGAACATACTTTATCAGAACATCAAAAAGAAAGAGAAGTTGTCTATAGCAACATTAGATCATCAACAGCGTTGTTAGTGAAACTGGACATCACAGACTTGAAATGTATTATTTGTAACGATAATATAGATTCTCTCGAAGATTTCATCAAGCATCTGACTGATAAACATAATCAGAATTTCCACACTGATATAAAAAACCAAATGTTTCCTTTCAAATTTGATACGGAGCAATTTAAATGCTGCCTATGCAATAACAATGCCATTTTTGGCACGTTTAAGTCATTACACGAGCATATGCACAAACATTACAGATATTACGTTTGTGAGAAATGCGACGTCGGATTCATTAACCGGGCCTCGTTAAAGAGCCATGCCTCCACCCACAAGAAAGGTAACTTCGTCTGCCGACATTGTCCCCTAGTATTTGATAAGCAGTCGAAGAGAAGTCATCACCAGATTCACGTCCATAAGGaagataatgaaataaataaatgcgaTTTTTGTAATCAAGGTTTTCGAAATGCGATTCATAAGCAAGCGCATCTGGTCGCAATGCATGGCGTTGCTCCTCGGAAATACGATTGCAAAACGTGTGATAGGAGTTTTCCTTCTAGTAGTCGTTTAAGCGCTCACGTGAGACGTTTTCATTTGCAAGAAAGACGACACAAATGCTCTGAATGcgacaaaagtttttttaggaCGAGTGAATTAAAAAGCCATATGTTAGTACATAGTGGAGTTAAAAATTACAAGTGTGATGTTTGTTCGAAGTTTCTTGCTACTCAATCAATTCTGAATAAGCATATGAGGATACATACTAATGATAGGCGCTTCAAGTGTACAGTATGTGGTCAGGCGTTTGTGCACAAACCTAGCCTCAACTGGCATATGAAGAAACATGCAAATTCTTACTAA
- Protein Sequence
- MYSNATPIQRRGTVGYVCSYCFEEYSDPADLKKHTLADHNRQTDPTLGYPKIASFSEYCVKLDITDLKCTKCAKPIDSLEDLLTHIQDEHYKKIYSDIPNHFIPFKFSTADLTCCLCEMTFDKFKLLQEHMHSHYKNYVCEDCGSGFVTRGSYLRHRIRHVKGDFPCSFCPKVFDTLAKKKSHEKFNHIKAQMYPNRCLYCDKSFKEYYRKEMHMSEVHGVKLALHKCNACDKSYKNKCRLLVHVKRDHLLERRYKYEEEKVEAATAIVISSDDEDILMKSEKHLISKHFKNLNLILKFSNATMIHKQTAEGYFCSYCSEPFMQPKCLKEHTLSEHQKEREVVYSNIRSSTALLVKLDITDLKCIICNDNIDSLEDFIKHLTDKHNQNFHTDIKNQMFPFKFDTEQFKCCLCNNNAIFGTFKSLHEHMHKHYRYYVCEKCDVGFINRASLKSHASTHKKGNFVCRHCPLVFDKQSKRSHHQIHVHKEDNEINKCDFCNQGFRNAIHKQAHLVAMHGVAPRKYDCKTCDRSFPSSSRLSAHVRRFHLQERRHKCSECDKSFFRTSELKSHMLVHSGVKNYKCDVCSKFLATQSILNKHMRIHTNDRRFKCTVCGQAFVHKPSLNWHMKKHANSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -