Acla042091.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrotis clavis
Gene Symbol
PRDM7
Assembly
GCA_954870645.1
Location
OX940944.1:7291496-7301861[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.25 30 6.7 0.3 1 21 306 326 306 327 0.92
2 12 0.041 5.1 9.2 0.6 9 23 342 356 334 356 0.86
3 12 1.5e-06 0.00018 23.2 2.6 1 23 362 384 362 384 0.99
4 12 1.5e-07 1.9e-05 26.3 1.6 1 23 390 412 390 412 0.99
5 12 6.4e-06 0.00079 21.2 2.5 1 23 418 440 418 440 0.99
6 12 0.00026 0.032 16.1 2.4 1 23 446 468 446 468 0.99
7 12 2.1e-05 0.0026 19.5 4.8 1 23 474 496 474 496 0.99
8 12 3.2e-07 3.9e-05 25.3 1.4 1 23 502 524 502 524 0.99
9 12 2.7e-07 3.3e-05 25.5 3.3 1 23 530 552 530 552 0.99
10 12 2.2e-07 2.7e-05 25.8 1.3 1 23 558 580 558 580 0.99
11 12 3.6e-07 4.4e-05 25.1 1.5 1 23 586 608 586 608 0.99
12 12 2.7e-06 0.00033 22.4 2.5 1 23 614 636 614 637 0.96

Sequence Information

Coding Sequence
ATGAATCGTCGAAATCTGCGGCAGAAGCCGCGCATTAGCTACTATGAACCCGAAGAGCCGAGCTTAGACGAATAtatctTTTGCGATGAGTGCGCCGACTTTGTGTACGAGTATTGTGCCTTACACGGACCTTTGTTGGTCATACCCGACGACAAGGTTCCATCTAAAAGTCCGTTCCCTGCATACGTCCCGCGCGCCGCCCTCACTATCCCGCATGTGTTCCTTCACCTAGCCCCCTCCATCATTCCAGGGGCGGGGCTGGGTGTATTCACCACACTTACCCTCCCGCGCGGTGTGCGCTTCGGTCCATACTGCGGAGTACGCACGCAACAAGTCGACTCCATGTATTGTTGGcagATCTACGACCGCTCGCACAAGCGCTCGCACGTGGTGGACGCGGCGGACGGCGACCGCTCCAACTGGATGCGCTATGTCAATTGCGCGAGGAACTGGCGCGAACAGAACCTCCTCGCTTACCAGTACAAGGGACAGCTGTATTATAGgacaataaaaataattcctcGCTTCACGGAGCTGATGGTGTTCTACGGCAGTGAGTTCGCGAACGCACTTCACATCAATCTCAGCAAGTACAACTCGCCGCCCGGATATGCGCAGAAATTCGgtgTGCCTGCTGCAAAGAAACCGAAATTAGACGTGCAAAAGGAAAATATCGCAGCTTCAATATCACCGCAGCTTAATGGTCAAGAAAATGccaaaaatactgaaaatataaaaaaaagttcgaCTAAAACTGTACGTAAAAccacaaaaaatataacaaataagAATTCTATCAAAACTATTTCAAAAGTAAATAATCTTAAATGtatgaaagaaaaatataatattcaagAAATTAAAAGTACAGAAAATAGTGCAACATTTCAGAGCAATAATATCAACAAAGATGAATTTAAATGTAAGATATGTAATTACAATGGTTTGAACAGTAGTGATATCACGAGACATCTTAATATGTGTAAGAAAGATGGATTGTTTAAATGTGATATTGGTCAgagtagttttagttttaagagTTCTATGAAAACTCATATTCGTACACACACTGGTGAGAAACCTTTTAAATGTGACATTTGTCAGAGTAGTTTTAATCAAAGGAGTTATTTGAAAACTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcaGAAAAGTTTTAATGAATCAGGTACTTTGAAAAAGCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcagcgtagttttattttaacaggTCATTTGAAAACTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcaGCGTAGTTTTATTATATCAGGTCATTTGAAATTTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgCCAAAGTAGATTTAATCAAAGGAATCATTTGAAAACTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcaGAAAAGTTTTAATGAATCAGGTACTTTGAAAACTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcagaaaagttttattcaaaaatgtGATTTGATAAAGCATATTCGTACACACACTGGTGAGAAACCTTataaatgtgatatttgtcaGAAAAGTTTTAATGAATCAGGTACTTTGAAAACTCATATTCGTACACACACTGGTGAGAAACcttttaaatgtgatatttgtcaGCGTAGTTTTAATCAAAGGATTAATTTGGAAACTCATATTCGTAAACACACTGGTGAGAAACCTTataaatgtgatatttgtcCAATAAGTTTTACTTACAGAAGTTCTTTGAAATATCACATTTTAAAACATCATAATTGA
Protein Sequence
MNRRNLRQKPRISYYEPEEPSLDEYIFCDECADFVYEYCALHGPLLVIPDDKVPSKSPFPAYVPRAALTIPHVFLHLAPSIIPGAGLGVFTTLTLPRGVRFGPYCGVRTQQVDSMYCWQIYDRSHKRSHVVDAADGDRSNWMRYVNCARNWREQNLLAYQYKGQLYYRTIKIIPRFTELMVFYGSEFANALHINLSKYNSPPGYAQKFGVPAAKKPKLDVQKENIAASISPQLNGQENAKNTENIKKSSTKTVRKTTKNITNKNSIKTISKVNNLKCMKEKYNIQEIKSTENSATFQSNNINKDEFKCKICNYNGLNSSDITRHLNMCKKDGLFKCDIGQSSFSFKSSMKTHIRTHTGEKPFKCDICQSSFNQRSYLKTHIRTHTGEKPFKCDICQKSFNESGTLKKHIRTHTGEKPFKCDICQRSFILTGHLKTHIRTHTGEKPFKCDICQRSFIISGHLKFHIRTHTGEKPFKCDICQSRFNQRNHLKTHIRTHTGEKPFKCDICQKSFNESGTLKTHIRTHTGEKPFKCDICQKSFIQKCDLIKHIRTHTGEKPYKCDICQKSFNESGTLKTHIRTHTGEKPFKCDICQRSFNQRINLETHIRKHTGEKPYKCDICPISFTYRSSLKYHILKHHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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