Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940945.1:1952330-1959440[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-06 0.00013 23.6 0.5 1 23 154 176 154 176 0.98

2 14 0.26 32 6.7 2.8 1 23 182 205 182 205 0.96

3 14 5.1e-06 0.00063 21.5 0.5 1 23 211 233 211 233 0.98

4 14 7.7e-07 9.5e-05 24.1 1.7 1 23 238 260 238 260 0.99

5 14 2.5e-05 0.0031 19.3 2.3 1 23 266 288 266 288 0.98

6 14 1.6e-05 0.002 19.9 1.4 1 23 294 317 294 317 0.95

7 14 4.7e-05 0.0057 18.5 3.6 1 23 323 345 323 345 0.97

8 14 3.1e-05 0.0039 19.0 0.5 1 23 351 373 351 373 0.99

9 14 0.0001 0.012 17.4 2.6 1 23 379 401 379 401 0.99

10 14 8.6e-08 1.1e-05 27.1 0.7 1 23 407 429 407 429 0.98

11 14 4.5e-07 5.6e-05 24.8 3.4 1 23 435 457 435 457 0.98

12 14 0.082 10 8.2 3.1 1 23 463 482 463 482 0.95

13 14 2.6e-06 0.00033 22.4 0.5 1 23 488 510 488 510 0.98

14 14 0.00038 0.047 15.6 1.7 1 22 516 537 516 537 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-06	0.00013	23.6	0.5	1	23	154	176	154	176	0.98
2	14	0.26	32	6.7	2.8	1	23	182	205	182	205	0.96
3	14	5.1e-06	0.00063	21.5	0.5	1	23	211	233	211	233	0.98
4	14	7.7e-07	9.5e-05	24.1	1.7	1	23	238	260	238	260	0.99
5	14	2.5e-05	0.0031	19.3	2.3	1	23	266	288	266	288	0.98
6	14	1.6e-05	0.002	19.9	1.4	1	23	294	317	294	317	0.95
7	14	4.7e-05	0.0057	18.5	3.6	1	23	323	345	323	345	0.97
8	14	3.1e-05	0.0039	19.0	0.5	1	23	351	373	351	373	0.99
9	14	0.0001	0.012	17.4	2.6	1	23	379	401	379	401	0.99
10	14	8.6e-08	1.1e-05	27.1	0.7	1	23	407	429	407	429	0.98
11	14	4.5e-07	5.6e-05	24.8	3.4	1	23	435	457	435	457	0.98
12	14	0.082	10	8.2	3.1	1	23	463	482	463	482	0.95
13	14	2.6e-06	0.00033	22.4	0.5	1	23	488	510	488	510	0.98
14	14	0.00038	0.047	15.6	1.7	1	22	516	537	516	537	0.94

Sequence Information

Coding Sequence: ATGCTTTCACTGTTTCGTGTAGGTTGGGTTTTACAGCTAAATCCGCTACCAAACAACCCAGCGTCCTACTCCATATGCAGTACTTGTGAACCAAGACTACGAGATGCAGCTCAGTTCAAGAGACAAGTGTCTCTGTGCGAAGACAAGTTGAAGGAGTATGTCTATGGCTGCGGGTATAAAGATACTTTGGCTGTTGACAAACAAGTTAAAAGTGAATTAGGGGGAGATGGATTGAAAGAAGAGTCAAATCCTGATGAAcaggatattaaatatgatGATGACAGCCTTCAATCGATGGAGATCTTCATCTCGCCGGTAGAAGATGATGACCAGCCTCTGTCTGTGTTGAGGAGCACCCGGTCTAGGGCGGAGCCCCGGAGCGACGCTGAGTGGGCTGAATCCAAGGATTTTAGTGATGATGACCAACCAAagcagaaaaagaagaaatctcAACAAAAATACTCCTGTGATATTTGTCAAAAGAAGTTCTCCTACAACGGTTCTTTAGAAGTACACATGAAAGCCCATAACGGGGAAAAATCATTCACTTGTCACCTATGCAGTTCCTCCCACACAAATAACAAAGAATTGACTGAACATATAACCATAGCTCACATCGTAAACAACACATATCCTTGCACAATATGCGAGAAAAACTTCGAAAAAGCACGACTcttaaaaaaacacataaaaattcaCTTTGAAGAAAAATTCAAATGTCCGGAATGTAGTAAGGAGTTCCAGAGAAAAAAAGGTTTGACTGAACACATGAAAACCCACACTGGGGAACGGAAATATAGTTGTACAGTTTGCAATAAGGCTTTTGGGCACAATCAAACATTAAAATCCCACATGTATATCCACACGGGTGAAAAACCATACGTATGTGATGTGTGTGGACGAAGATTTTTACAAAGATCTCATTTAAAAAGACACATTTTTATAATACATACTGGAATTAAATTACATACTTGTAATGTATGTCAGAAACAGTTTTCAAGCAAAAGTTATCTATCAATACATGAGAGGCAACATAcgggtgaaaaaccttacacaTGTGAGGTTTGCAAGAAAGATTTCAGAGCAATAACGACTTTGAAAGTGCATATGCGCGTCCATACGGGGTTTAAACCGTACACCTGTTCATTTTGCAATAGACAATTCGCTCAAATGGCTAGTTTTAAGCTCCATCAACGAACACACACAGGCGAGAAACCGTTTTCTTGCAAAATATGCAAAAAACCGTTTTCGGATAACGGCTATTTGAAAATTCATATGCGTGTTCATTCTGGCGAGAAACCGTTTTCTTGCGAGATTTGTAAGCGATGTTTTAGAGAGTCTGGGCAATTAAAAAGGCATATGAGAGTGCATACTGGAATTAAACCTTATACTTGTAAGATTTGTAATAAGCAAATAGGTAATTTGTCAAAGCATATGCGTGTACATTCCGAAGAGAGGCCGTATAGTTGTGAAATATGCAATAAACAGTTTTCTATAAATGGTACTTTGAAATTGCATATGAGAATTCATACTGGAGAGAAACCTTTTGCTTGTGAAATTTGCAATAGTCAATTTACTCAGAGCAGTGGGTTAAAAAGACATAGATGTACTAATATTGGAAAAAGTGACGCTCTAAGTTCCTAA
Protein Sequence: MLSLFRVGWVLQLNPLPNNPASYSICSTCEPRLRDAAQFKRQVSLCEDKLKEYVYGCGYKDTLAVDKQVKSELGGDGLKEESNPDEQDIKYDDDSLQSMEIFISPVEDDDQPLSVLRSTRSRAEPRSDAEWAESKDFSDDDQPKQKKKKSQQKYSCDICQKKFSYNGSLEVHMKAHNGEKSFTCHLCSSSHTNNKELTEHITIAHIVNNTYPCTICEKNFEKARLLKKHIKIHFEEKFKCPECSKEFQRKKGLTEHMKTHTGERKYSCTVCNKAFGHNQTLKSHMYIHTGEKPYVCDVCGRRFLQRSHLKRHIFIIHTGIKLHTCNVCQKQFSSKSYLSIHERQHTGEKPYTCEVCKKDFRAITTLKVHMRVHTGFKPYTCSFCNRQFAQMASFKLHQRTHTGEKPFSCKICKKPFSDNGYLKIHMRVHSGEKPFSCEICKRCFRESGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSEERPYSCEICNKQFSINGTLKLHMRIHTGEKPFACEICNSQFTQSSGLKRHRCTNIGKSDALSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00447462;
90% Identity: -
80% Identity: -