Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940946.1:6775661-6784937[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.0018 0.22 13.5 1.5 1 23 83 106 83 106 0.96

2 31 0.0017 0.21 13.6 0.3 1 23 206 228 206 228 0.97

3 31 0.3 37 6.5 1.9 1 23 233 255 233 255 0.96

4 31 1.1 1.3e+02 4.7 2.1 2 23 263 285 262 285 0.91

5 31 0.00035 0.043 15.7 1.9 1 23 292 315 292 315 0.96

6 31 0.00018 0.022 16.6 6.1 1 23 321 343 321 343 0.97

7 31 5.7e-06 0.0007 21.3 2.0 1 23 349 371 349 371 0.99

8 31 1.1e-06 0.00014 23.5 0.6 1 23 377 399 377 399 0.99

9 31 0.0079 0.98 11.4 0.4 1 23 477 500 477 500 0.95

10 31 3.2 3.9e+02 3.2 0.0 2 23 528 550 527 550 0.91

11 31 0.01 1.3 11.1 0.2 1 23 600 622 600 622 0.97

12 31 1.1 1.3e+02 4.7 0.8 1 23 627 650 627 650 0.89

13 31 0.039 4.9 9.2 1.7 1 23 657 680 657 680 0.94

14 31 0.00036 0.045 15.6 2.0 1 23 687 710 687 710 0.97

15 31 6.8e-05 0.0083 17.9 4.4 1 23 716 738 716 738 0.98

16 31 1.2e-06 0.00015 23.5 1.1 2 23 745 766 744 766 0.98

17 31 0.0028 0.35 12.8 1.8 1 23 864 887 864 887 0.94

18 31 0.36 45 6.2 0.3 2 23 914 936 913 936 0.95

19 31 0.35 44 6.2 3.6 2 23 959 980 958 980 0.91

20 31 0.002 0.25 13.3 0.3 1 23 984 1006 984 1006 0.95

21 31 0.043 5.3 9.1 0.9 1 14 1011 1024 1011 1025 0.91

22 31 2 2.5e+02 3.9 1.3 1 23 1108 1131 1108 1131 0.93

23 31 0.025 3 9.9 0.1 2 23 1158 1180 1157 1180 0.95

24 31 0.064 7.8 8.6 3.0 2 23 1203 1224 1202 1224 0.97

25 31 0.052 6.5 8.9 0.0 1 23 1228 1250 1228 1250 0.96

26 31 0.0026 0.32 12.9 3.0 1 23 1255 1278 1255 1278 0.97

27 31 0.058 7.1 8.7 0.9 1 23 1284 1307 1284 1307 0.91

28 31 0.075 9.3 8.4 1.4 2 23 1315 1337 1314 1337 0.96

29 31 0.004 0.5 12.4 1.5 1 23 1343 1365 1343 1365 0.96

30 31 0.00089 0.11 14.4 0.2 1 23 1371 1393 1371 1393 0.99

31 31 0.00015 0.018 16.9 3.2 1 23 1399 1422 1399 1422 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.0018	0.22	13.5	1.5	1	23	83	106	83	106	0.96
2	31	0.0017	0.21	13.6	0.3	1	23	206	228	206	228	0.97
3	31	0.3	37	6.5	1.9	1	23	233	255	233	255	0.96
4	31	1.1	1.3e+02	4.7	2.1	2	23	263	285	262	285	0.91
5	31	0.00035	0.043	15.7	1.9	1	23	292	315	292	315	0.96
6	31	0.00018	0.022	16.6	6.1	1	23	321	343	321	343	0.97
7	31	5.7e-06	0.0007	21.3	2.0	1	23	349	371	349	371	0.99
8	31	1.1e-06	0.00014	23.5	0.6	1	23	377	399	377	399	0.99
9	31	0.0079	0.98	11.4	0.4	1	23	477	500	477	500	0.95
10	31	3.2	3.9e+02	3.2	0.0	2	23	528	550	527	550	0.91
11	31	0.01	1.3	11.1	0.2	1	23	600	622	600	622	0.97
12	31	1.1	1.3e+02	4.7	0.8	1	23	627	650	627	650	0.89
13	31	0.039	4.9	9.2	1.7	1	23	657	680	657	680	0.94
14	31	0.00036	0.045	15.6	2.0	1	23	687	710	687	710	0.97
15	31	6.8e-05	0.0083	17.9	4.4	1	23	716	738	716	738	0.98
16	31	1.2e-06	0.00015	23.5	1.1	2	23	745	766	744	766	0.98
17	31	0.0028	0.35	12.8	1.8	1	23	864	887	864	887	0.94
18	31	0.36	45	6.2	0.3	2	23	914	936	913	936	0.95
19	31	0.35	44	6.2	3.6	2	23	959	980	958	980	0.91
20	31	0.002	0.25	13.3	0.3	1	23	984	1006	984	1006	0.95
21	31	0.043	5.3	9.1	0.9	1	14	1011	1024	1011	1025	0.91
22	31	2	2.5e+02	3.9	1.3	1	23	1108	1131	1108	1131	0.93
23	31	0.025	3	9.9	0.1	2	23	1158	1180	1157	1180	0.95
24	31	0.064	7.8	8.6	3.0	2	23	1203	1224	1202	1224	0.97
25	31	0.052	6.5	8.9	0.0	1	23	1228	1250	1228	1250	0.96
26	31	0.0026	0.32	12.9	3.0	1	23	1255	1278	1255	1278	0.97
27	31	0.058	7.1	8.7	0.9	1	23	1284	1307	1284	1307	0.91
28	31	0.075	9.3	8.4	1.4	2	23	1315	1337	1314	1337	0.96
29	31	0.004	0.5	12.4	1.5	1	23	1343	1365	1343	1365	0.96
30	31	0.00089	0.11	14.4	0.2	1	23	1371	1393	1371	1393	0.99
31	31	0.00015	0.018	16.9	3.2	1	23	1399	1422	1399	1422	0.98

Sequence Information

Coding Sequence: ATGATAAAAATCAGAAACAAAGTAACTCGCTGCTCAAAAAATTTTGAGGATAAACAAGCAAAACTGGCCACATCTACGAACATCAAAGTAGAGCCGAAAACTGAAGAAGCTCTAGCAGAAgaaagtataacaaaaaaacttcCCAAACCACGCTTAAAGCGACTTCTGCAAAAGTATCTAGACAATCTGAAACTAATTCTAGAGTATACTAATGCGACTATGATACTCAAACATAACGATAAAGGATATTTTTGCTGCTATTGCCCAGAAACGTTCCAAGAACCCACCAATTTAAAAGCACACACCTTATCCGAACatcaaaatgaagaaaaattcTATGGCAATATAAAAGCTAGAGGACCAGCTCGATTCTTAGTCAAACTTGACATCACTAATTTAAAATGCGCGATTTGTAGCAACAATATCGATTCTCTGGACGGTATATACGTTCACCTCGCagaaaaacataacaaaaaattCCATACTGATATACAGAATCAAATATTTCCTTTCAAGTTCAATACAAAAGAAATGAAATGCTGTCTATGCGTTAGTGACGTGGTCTTCGCTACATTTAGCGCATTGCATGAGCATATGCACTTACACTACAGATACTTCGTTTGTGACGTCTGTGACGCTGGATTCGTTAATCACGATACTCTATCGAACCACAAACTCATTCACACGAAAGGAAACTTCACCTGTCGACACTGTCCGGCCGTATTCGACAACATATACAAAAGAAGAAACCACGAAATACGCCATAGTAAAGCCGGCAAACTGAACAAATGCCATTTCTGCAACGAATTTTTCAAAGATTATCTTACAAAGGAAATTCATCTTGCTAAAGTACATGGCGTTGCTCCAGCGAAACATAACTGTACTGCCTGTGACAGGACATTTCCTTCCAACAGCTTCCTTAGTGCGCATATAAGACGGTTTCACCTAATGGAGAAGACGCACAAATGTTCAGAATGCGACAGAGCATTCTTCAGAGAAAGCCATTTAAAGAAACATAAGCTGTCTCATACAGGGgctaaaaattttaaatgcgAAGTTTGTTCCAAGCAGTTCACCACTAAGTCTATTCTAACTCGGCATATGAGGATACATAACAATGATCGGCGATTTAAATGTACAATATGTGATCAGGCGTTTGTTCAAAAACCTAGTTTGAACTGGCATATGAAGAAACATGCGGGAGCAGATATTGaTATACAAGCAGAACTGGCTACAACTACGACCATCAAAATAGAGCCGATAAATGAAGAAAGTGTAGTTATACCTAACGAAGAACGTAAACACATAAAACCCGACACAGCAACTAGACCACGCATTAAGAGACTATTGCACAAGCATCTAGACAATCTAAAACTTATCTTAGAATCTACGAATGCCACCATGATACTCAAACATAGCGATAAAGGATATCTTTGCTGCTATTGTCCGGAAGCTTTCCAAGAACCCATAAATTTGAAAGTGCACACTTTAACTGAACATAAGAATGAAGAAAAATTCTATGGAAATATTACTGCTATTGGACCAGCTAGATTCTTAGTTAAACTTGACATTACAAACCTGAAATGCATGCTTTGCAACGCCAGTATCGATTCTCTCGAAGACTTATTCGTGCATCTGacagaaatacataataaaacgtTCCATACTGatataaaaaatcaaatatttccTTTCAAGTTCAATACGAAGAAACTGCAATGCTGCCAATGTAATACTGACGGCATTTTTTCCACATTTAGAGCATTACATGAGCATATGCACAAACACTACCGTTATTTCATTTGTGATCGATGTGATGCTGGTTTCATCAATCATATGTCACTAGCCAGTCATATCGTTACACACACTACAGGGATTTTCGTTTGCCGGTATTGTCCTGTCTCATTTGACAACGTGCTAAAGAGAAGAAACCACGAAATGCGTAGACATACCAACACAGACAAATCGCATGTATGCCATATATGCAACAAGGGTTTTAAGGAATATGTTGCGAAGGAATTGCATCTGTCAACAGTTCACGGATTCAATCCGCGGATTTACAATTGCAGTGCGTGTGATCGAACTTTTACTGCCCACAGTTTGCTTAGAGTGCATATCAGACGCTTTCATCTTATGGAGAAGAATCACAAATGTTCTGAGTGCAATAGAGGGTTCTTTAGATATAATGATCTAAAAAAACATATGCTAACTCATACAGGAGTTAAGGAAGTAAAATGTGAAGTGTGTACGAAGCAGTTTGCTAAAAAATCTAATCTTAATCAGCATATGAGAATTCATAATGATGATCGGCGTTTTAAATGTGATGAAGAAACAACTGTTATGAAGCGAGAAACAGGAGACGTAGCACCTAAAGACAGAGTAGGAGAAAAACAGGATACGAAAGACATGACATTTACTGAATATATACATGATATAGAAGGAACTAACGAGACGGACAgtatagaagaaaaaaataaagaagcaGAAAAAATAACACCAAGAACGGAACTTTTAAAACACAGAAAAATCATTAAAGAAATACTTGATAATTCTAACGCGACACCAATACGACGGTACGGAGGTATTGGATACAACTGCTGCTATTGTTCAGAACAGTTTGAACAACCTGCAGACCTGAAAAAACATACATTGGAGAACCACAATGATGTGGCAGCAGCAAACTTTATGAAGAAAATGAACATGTCAGAATACGTCGTCAAATTAGACATAACTGCACTAAAATGCAAGATATGTAACGCTGAAATGAGTAGTCTGGACAACTTTGTTCTACACCTTAATAATACACATGAAAAGAAAATAGATGTGAACTATACGAACCACATCTTCCCTTTAAAATTGGATGACAGTTTACTCAAGTGCATTTTTTGTGGTCATACTTTTACAACATTCAGAACTCTGGTTGGACACATGCATGTTCATTACAGAAATTACGTCTGCACTATTTGTGATGCAGGATTCGTAAATCGAAACTCATTTACTCAACATACAGTTAACCATAAAACTGGCAGTTTTGTTTGTAGTCACTGTCCAAAAGTCTTTAATACTCAAGGTAAACCTCAAGCTGTTACAGTCGCGATTAAAAAAGAAGTCAACCAACCAGATCAagctaaaaaaggaaaaattacaACTGCAAAAGTTCCTGCTATTGGTGCGGGACACCCTAGAGTAGCAGGATCAGACTGCAATAATCCTATAGCTTCAAAATGGTTCAGTTATGAGATCTACAAACATAAAtctaatattattgaaataatgCGCAGTTCTAATGCTACACCAATAAAGATGTGGGGAGATAAGGGTTACATGTGTTGTCACTGTGAAGACCAATACCCAGAGGCTGCAGATCTTAAGAAACACACCCTGGAAGAGCATGACGATGTATCCAAAACATGTTTCTTGAAAAACATGAGCATGTACCATTACATCGTCAAATTAGACATCACTGATCTACAGTGCAAGATTTGTAGCAAAAGTATTGACACTGTTGAGGAACTAATGGAGCACTTACAGAATGAACACAAAAAATTAATATATACAGACATCAAAAACCACGTAATCCCTTTCAAGTTAAACACAAAACCCCTCGAATGTTTCATCTGCAAGAATGTTTTCCACAAATTCAAATTGTTGACCATCCATATGAATAAACACTACAGAAATTATGTTTGTGATATCTGCGATGCTGGATTCGTAAATATCTCTGGAATTAGGCTTCATAAGTCGATACACAAGATTGGAAGTTACAACTGTACGAAATGTAATATAACTTTCGACACCAAAGCCAAGAGAAATCGGCATGTAAAAACTAAGCATACCAAAGAAATTCGCCACACTTGCGGATACTGTAAGGAATCATTCAACGATTACAGAAAAAAGGAAGCTCATCTCATAGCTGCACACGGAATGACTCAACCGAAACTAAAATGTCAAGCTTGCGACAAATTATTTGATCACCAAAAACGTTTGGCCGTCCACGTGAAAAGAGATCACTTGATGGAAAGACCACATGCATGCACAGTATGTGAAAAGAAATTCTTTGCTTTGGGCGAGCTGAGAAATCATATGACGAAGCATACAGGAGAAAGGCCTTACAAATGTGAGGTTTGTTTAAAGGCTTATGGATTAGCGAAGACCTTGAGAGAGCATATGAGGATTCATAATGATGATAGGCGTTTTAAATGTGAGCAATGTGGACAAGCTTTCGTCCAGAAGTGCAGCTGGCGAAGTCATATGAAGTCTAAGCACGGGGAAAAAGTTTAA
Protein Sequence: MIKIRNKVTRCSKNFEDKQAKLATSTNIKVEPKTEEALAEESITKKLPKPRLKRLLQKYLDNLKLILEYTNATMILKHNDKGYFCCYCPETFQEPTNLKAHTLSEHQNEEKFYGNIKARGPARFLVKLDITNLKCAICSNNIDSLDGIYVHLAEKHNKKFHTDIQNQIFPFKFNTKEMKCCLCVSDVVFATFSALHEHMHLHYRYFVCDVCDAGFVNHDTLSNHKLIHTKGNFTCRHCPAVFDNIYKRRNHEIRHSKAGKLNKCHFCNEFFKDYLTKEIHLAKVHGVAPAKHNCTACDRTFPSNSFLSAHIRRFHLMEKTHKCSECDRAFFRESHLKKHKLSHTGAKNFKCEVCSKQFTTKSILTRHMRIHNNDRRFKCTICDQAFVQKPSLNWHMKKHAGADIDIQAELATTTTIKIEPINEESVVIPNEERKHIKPDTATRPRIKRLLHKHLDNLKLILESTNATMILKHSDKGYLCCYCPEAFQEPINLKVHTLTEHKNEEKFYGNITAIGPARFLVKLDITNLKCMLCNASIDSLEDLFVHLTEIHNKTFHTDIKNQIFPFKFNTKKLQCCQCNTDGIFSTFRALHEHMHKHYRYFICDRCDAGFINHMSLASHIVTHTTGIFVCRYCPVSFDNVLKRRNHEMRRHTNTDKSHVCHICNKGFKEYVAKELHLSTVHGFNPRIYNCSACDRTFTAHSLLRVHIRRFHLMEKNHKCSECNRGFFRYNDLKKHMLTHTGVKEVKCEVCTKQFAKKSNLNQHMRIHNDDRRFKCDEETTVMKRETGDVAPKDRVGEKQDTKDMTFTEYIHDIEGTNETDSIEEKNKEAEKITPRTELLKHRKIIKEILDNSNATPIRRYGGIGYNCCYCSEQFEQPADLKKHTLENHNDVAAANFMKKMNMSEYVVKLDITALKCKICNAEMSSLDNFVLHLNNTHEKKIDVNYTNHIFPLKLDDSLLKCIFCGHTFTTFRTLVGHMHVHYRNYVCTICDAGFVNRNSFTQHTVNHKTGSFVCSHCPKVFNTQGKPQAVTVAIKKEVNQPDQAKKGKITTAKVPAIGAGHPRVAGSDCNNPIASKWFSYEIYKHKSNIIEIMRSSNATPIKMWGDKGYMCCHCEDQYPEAADLKKHTLEEHDDVSKTCFLKNMSMYHYIVKLDITDLQCKICSKSIDTVEELMEHLQNEHKKLIYTDIKNHVIPFKLNTKPLECFICKNVFHKFKLLTIHMNKHYRNYVCDICDAGFVNISGIRLHKSIHKIGSYNCTKCNITFDTKAKRNRHVKTKHTKEIRHTCGYCKESFNDYRKKEAHLIAAHGMTQPKLKCQACDKLFDHQKRLAVHVKRDHLMERPHACTVCEKKFFALGELRNHMTKHTGERPYKCEVCLKAYGLAKTLREHMRIHNDDRRFKCEQCGQAFVQKCSWRSHMKSKHGEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -