Basic Information

Insect: Agrotis clavis
Gene Symbol: -
Assembly: GCA_954870645.1
Location: OX940920.1:19663906-19690515[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0001 0.013 17.4 2.2 1 23 426 448 426 448 0.97

2 20 0.0053 0.66 12.0 0.6 1 20 454 473 454 476 0.94

3 20 2.7e-05 0.0033 19.2 5.6 1 23 495 517 495 517 0.98

4 20 0.00012 0.015 17.1 4.1 1 23 523 545 523 545 0.99

5 20 4.7e-05 0.0058 18.4 5.3 1 23 551 573 551 573 0.97

6 20 1.1e-05 0.0013 20.4 7.4 1 23 579 601 579 601 0.97

7 20 9.1e-07 0.00011 23.8 2.9 1 23 607 629 607 629 0.97

8 20 0.00013 0.016 17.1 6.7 1 23 635 657 635 657 0.97

9 20 0.00013 0.016 17.1 6.5 1 23 663 685 663 685 0.97

10 20 6.2e-07 7.7e-05 24.4 1.9 1 23 691 713 691 713 0.98

11 20 1.2e-05 0.0015 20.3 7.7 1 23 719 741 719 741 0.98

12 20 3.5e-05 0.0044 18.8 3.7 1 22 747 768 747 768 0.95

13 20 2.5e-06 0.00031 22.4 4.2 1 23 810 832 810 832 0.98

14 20 8.5e-06 0.001 20.8 5.0 1 23 838 860 838 860 0.96

15 20 1.4e-05 0.0017 20.1 5.2 1 23 866 888 866 888 0.98

16 20 3.9e-06 0.00048 21.8 6.0 1 23 894 916 894 916 0.98

17 20 7.6e-05 0.0093 17.8 7.9 1 23 922 944 922 944 0.97

18 20 7.7e-06 0.00095 20.9 5.4 1 23 950 972 950 972 0.98

19 20 0.00093 0.11 14.4 0.3 1 23 979 1001 979 1001 0.96

20 20 0.59 73 5.5 5.1 1 23 1013 1035 1013 1035 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0001	0.013	17.4	2.2	1	23	426	448	426	448	0.97
2	20	0.0053	0.66	12.0	0.6	1	20	454	473	454	476	0.94
3	20	2.7e-05	0.0033	19.2	5.6	1	23	495	517	495	517	0.98
4	20	0.00012	0.015	17.1	4.1	1	23	523	545	523	545	0.99
5	20	4.7e-05	0.0058	18.4	5.3	1	23	551	573	551	573	0.97
6	20	1.1e-05	0.0013	20.4	7.4	1	23	579	601	579	601	0.97
7	20	9.1e-07	0.00011	23.8	2.9	1	23	607	629	607	629	0.97
8	20	0.00013	0.016	17.1	6.7	1	23	635	657	635	657	0.97
9	20	0.00013	0.016	17.1	6.5	1	23	663	685	663	685	0.97
10	20	6.2e-07	7.7e-05	24.4	1.9	1	23	691	713	691	713	0.98
11	20	1.2e-05	0.0015	20.3	7.7	1	23	719	741	719	741	0.98
12	20	3.5e-05	0.0044	18.8	3.7	1	22	747	768	747	768	0.95
13	20	2.5e-06	0.00031	22.4	4.2	1	23	810	832	810	832	0.98
14	20	8.5e-06	0.001	20.8	5.0	1	23	838	860	838	860	0.96
15	20	1.4e-05	0.0017	20.1	5.2	1	23	866	888	866	888	0.98
16	20	3.9e-06	0.00048	21.8	6.0	1	23	894	916	894	916	0.98
17	20	7.6e-05	0.0093	17.8	7.9	1	23	922	944	922	944	0.97
18	20	7.7e-06	0.00095	20.9	5.4	1	23	950	972	950	972	0.98
19	20	0.00093	0.11	14.4	0.3	1	23	979	1001	979	1001	0.96
20	20	0.59	73	5.5	5.1	1	23	1013	1035	1013	1035	0.98

Sequence Information

Coding Sequence: ATGAATCAGGATCACCACAATATGAATACGGGTGGTGGCCAGCCCCCGGGAAGTTCTGAGTCACAGGGCCAGAGAGTTCAGGCCGCCCAGCAGCAACAGCAAAATAACATGCCTGCCACGACGTCTGCTACTGATTTGCGAGTGAACTCGGCGGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTGTTCCCGGGACCTATTCCGCAAGTGTCTGTGTACGGATTGCCTGCTGGGGCCAGGATTGAAAATGGGAAACCTGTTCAGGATCTTGGTCAAGCTCATGCAAGTATACTGAACGGTGATCCAAATATCATACTTGGGCATCATACAGGACAGTCCCAAGTCACTGTGTCTGCTGGTGGTCAGCAGATACCAGTCTCACAGATCATCGCTACACAGTCAGGACAAACTCATGAAGCTCTGGTGGCCCACAGCCAGCAGCAAGCTGAGCTGGCGGCCGCTCAGAACTCAGCAAACAACGGCCAGGTGTCAGTTAGTGCCGGCCAGGCCACTCATCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGTCACCATTCTCAACAACATATAATGCAGCAGCAACTAATGGCGCAAGCGCGGCCAGATCACAGCAACCAACAGATCCAACTGACGGTAAGCGAAGACGGCATTGTGACAGTGGTGGAACCCGCCGGCACAAAGATGGTCGATAAGGAGGAGTTACATGAGGCCATCAAGATGCCCAACGACCACACCCTGACAGTGCACCAGCTGCAGCAGATAGTGGGACAACAGGTGTTAGACAGCGTTGTTCGCATAGAACAAGCGACCGGTGAGCCGGCGAACATCCTAGTGACCCACAACCCTGACGGTACGACCTCCATTGAAGCCAGTGCTGCCGACTCCATGATTGTCAAAGACGAGAAGAGTGCTAACAAAATAGAGACTGCACAGTTTGCCATACCTGCTGAGATAAAAGATATAAAGGGAATTGACTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGTGCAGTGGTGAAGATCTCAGCTGGGGCGTCAGAGCACGACCTTCATGCGATGTACAAAGTCAATGTTGAAGATCTATCACAACTGCTTGCCTACCACGAAGTCTTCGGGAAACTTAATTCGGAAGGCCAGCAACAACCAGCTAAGgtTATCAATGAGGTGGAAGTCGAAGTGGAAGCCGGCACCAGCGCAGCCATGTCAGAAGCCGAATCCTCACCCGGCCACCACTCATGTGATATCTGCGGCAAAATATTCCAATTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGCGAAAGTAAACCGTTCACGTGTCAAGTTTGCGGTTCCGCATTCGCTAATCCTGTCGAATTATCGAGGCATGGAAAATGCCATCTTGCCGGAGATCCGAACGAAAGACACGCGAAGAGAATGGCCCAGGATAAGCCATATGCCTGCACTACTTGCCACAAAACTTTCTCCCGTAAAGAACATTTGGACAACCATGTTCGGAGTCATACTGGAGAAACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACGGGCGAGACCCCACATCGATGTGACATTTGCAAGAAGAGTTTCACAAGAAAGGAGCACTTCATGAACCATGTTATGTGGCACACAGGTGAGACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCACACACGAACGATACTCCTTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAGACCCCGCATCGCTGCGACTTCTGCTCGAAGACGTTTACACGTAAGGAGCATCTGTTGAACCACGTCCGTCAGCACACTGGCGAGTCCCCTCACCGCTGCAACTTCTGCAGCAAGTCATTCACTCGTCGAGAGCATCTCGTCAACCACGTGCGACAACATACTGGGGAGACACCCTTCCAGTGTGGATACTGCCCTAAAGCATTCACTAGGAAGGATCACCTAgTGAACCACGTCCGTCAGCATACAGGCGAGTCCCCGCACAAATGCTCGTACTGCACAAAGTCCTTCACTCGCAAGGAGCATCTGACGAATCACGTTCGACAACACACCGGCGAGTCGCCGCACCGATGTTCTTACTGCGCCAAGTCCTTCACAAGGAAAGAACACCTCACCAATCATGTCAGGAGAATGTTGTTCTATCCGTTCCCTTACTCTTGCGGTAGCGACGGCGGTAGTATTAATTGGCATGTTGTTAATAATAAGGAATCGGAATGTACTCTGTTGCGCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGTCACGCCGCACGCCTGCTCCTACTGTAGCAAGAGCTTCACCAGGAAGGAACACCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACAGGAGAAACGCCCCACAAATGTCCCTTCTGCACAAAAACATTTTCCAGAAAGGAACACTTGACCAATCATGTCAGGATTCACACTGGCGAGTCTCCGCATCGCTGCGATTTCTGTCAGAAGACGTTCACTCGTAAGGAGCACTTGACGAATCATTTGAAGCAGCACACGGGCGACACCGCACACGTTTGCAAAGTGTGCTCTAAGAATTTCACAAGGAAGGAACATCTTGTCACACACATGAGGTCACACAGTTGTGGCGAGCGTCCATTCAGCTGCGGCGAGTGCGGCAAGTCTTTCCCCTTAAAAGGCAACCTACTCTTCCATGAAAGATCGCACAGCAAGAACAATGCCAACGCTGCCAATAAGCTGTTCCGATGTGAAGTCTGTTCTAAGGAGTTCCTTTGTAAAGGCCATTTGGTGTCTCATCGGCGCACGCACGCAGAGTGGGCGGAAGGTACCGCGCCTGGCGAAGCACCCGCTGAAACAGAAGACTGTACTGATAGTAAATGTATCAAAGTCGAACCAGAACGAACTGAGAGGAAACATGAAGTCAGGACGACTGTTGAAACGAGACCGGCTGAGCAGAACAATGTCGCACAAAGTCAACCAAACACGCCTACTGTGATGATAACTAATAATCAACAAGTCCGCGCGGCGACTGTGAGCACAGTGGGTGCCGTGAACCCGGTGGGAGCAgtgggcgcgggcggcgcggccaCCTTCACCCACGCGGTGGGCGCGCCGCACCACGCGGGCGCCAACATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNQDHHNMNTGGGQPPGSSESQGQRVQAAQQQQQNNMPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHTGQSQVTVSAGGQQIPVSQIIATQSGQTHEALVAHSQQQAELAAAQNSANNGQVSVSAGQATHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMAQARPDHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAADSMIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQPAKVINEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHVRRMLFYPFPYSCGSDGGSINWHVVNNKESECTLLRRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKNFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHSKNNANAANKLFRCEVCSKEFLCKGHLVSHRRTHAEWAEGTAPGEAPAETEDCTDSKCIKVEPERTERKHEVRTTVETRPAEQNNVAQSQPNTPTVMITNNQQVRAATVSTVGAVNPVGAVGAGGAATFTHAVGAPHHAGANIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_01030446;
80% Identity: -