Acla014581.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- -
- Assembly
- GCA_954870645.1
- Location
- OX940925.1:5283455-5286393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.1e-08 2.5e-05 25.3 0.0 3 39 17 53 15 58 0.85 2 5 4.2 5e+03 -1.2 0.0 2 10 165 173 164 174 0.88 3 5 4.2 5e+03 -1.2 0.0 2 10 177 185 176 186 0.88 4 5 4.2 5e+03 -1.2 0.0 2 10 201 209 200 210 0.88 5 5 5.7 6.6e+03 -1.6 0.0 2 10 213 221 212 222 0.88
Sequence Information
- Coding Sequence
- aTGCCGAAAGTACGCGTCAGGACAACTAAAAAGGCTTCCTGGTCTTCTGATAGCCTAGATAAAGCTATACAGCTCATTGATGGCGGTTCTTCCATAAGAAATGCTGCTAAAGTAATGGGAATCCCTTTTTCAAGCCTTCAGAAGAGGATAAAAAAAGGTTCTACCTTAGGACCACATCTAGGACGATTCACTGTCTTTAGTCCTGAGGCAGAAGCCGAGTTAGCGAACTTGGTAAAGAAAATGGCAAATATTTTCTATGGTTCTACTTCTAACCACTTGAACGCCAGGAGACATTTGAgtgtaaaaaaattttttgtagTACAACGTTACGATCAAACGAGCAATCGACTTCAGGCCTTCAGGCTGAGGGTGGTGGTAGAGAGAGAGGAAGAGGGCGAGGAAGAGGTAGAGGAAGAGGGAAGGGGAAATCTGCAGATCCCCATTGACGTCAGCATCGAGACTGCCATCTCCGCAGCCATCGACGTCAACATCGAGACTGCCTTCTCCGCAGCCATCCACGTCAACATCGAGACTGCCTTCTCCGCAGCCATCCACGTCAACATCGAGACTGCCATCTCCGCAGCCATCGACGTCAACATCGAGACTGCCTTCTCCGCAGCCATCCACGTCAACATGGAGACTGCCTTCTCCGCAGCCATCCACGTCAACATCGAGACTGCCATCTCCGCAGCCATCGACATCGGCGCAGAGGCTGTCATCACCACTCGAAGATAG
- Protein Sequence
- MPKVRVRTTKKASWSSDSLDKAIQLIDGGSSIRNAAKVMGIPFSSLQKRIKKGSTLGPHLGRFTVFSPEAEAELANLVKKMANIFYGSTSNHLNARRHLSVKKFFVVQRYDQTSNRLQAFRLRVVVEREEEGEEEVEEEGRGNLQIPIDVSIETAISAAIDVNIETAFSAAIHVNIETAFSAAIHVNIETAISAAIDVNIETAFSAAIHVNMETAFSAAIHVNIETAISAAIDIGAEAVITTRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -