Acla025621.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- pol
- Assembly
- GCA_954870645.1
- Location
- OX940931.1:24312546-24328883[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.2e-12 8.4e-09 36.4 0.0 4 39 148 184 145 188 0.89 2 4 4.6e-11 5.4e-08 33.9 0.2 2 39 200 237 199 241 0.93 3 4 5.4e-14 6.3e-11 43.3 0.0 2 45 255 299 254 299 0.96 4 4 3e-17 3.6e-14 53.6 0.0 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGGCACGGCCTGTCGCAAGTGAAATGCGAACCGCTCTCGGATGAAGAAGACAGCGACTCACAATTCGCGCACAATTATTTATCCAGTCAGGGCAGTGGCTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCAGCCACGCCGGTGTGCGTCAAGCAGGAGCGAGCTGACTCCCCTCCAGCTTCAACCCTGGAGACACTGGAGTCGGCACCACATAATGCTAAGAGTGTGTCCTTGTTGGATCGTCACATGGAATTTATGAACGTCACCGAAGTGCCTGATTCCGCTGACTTCATGCCGCTACTGGCTGTCAAGGATGAACCCTCGTCCGAAGGTGAACAACCTCAGCTCAGTGGTGAAGACACGAGTGATTCCTGCGGCCGGCAAGCTTCGCCAGCTCCGCGACACAGCCCTAAGAGCTGGACCCAACAGGATATGGAGCGAGCTTTGGACGCTCTCAGaaaccatcaaatgagcctTACGAAGGCGTCAGCAACGTACGGCATTCCTTCCACGACGCTATGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGACCGACCTGCGGGGGGCGCTGCACGCGCTGCGGGCCGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGCATTCCTAGCAGCACGCTGTACAAGATAGCCCGGCGGGAGGGCATTCGACTGTCGGCGCCATTCAACGCGGCGCCGACCGCGTGGCGCCGCGCGGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTATGGGATACCCACAGGAACGCTGTATGGTCGTTGTAAGAGGGAGGGCATCGAGCTGTCCCGCTCGAACCCCACGCCGTGGTCCGAAGACGCCATGGGCGAAGCACTGGAAGCTGTCAGGATTGGGCAGATGTCCATAAACCAGGCGGCAATCCACTACAACCTGCCCTACTCCTCTCTATACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGCCAAACTACGCAAACAAGTATACCAATCGCATTGACTTTGAATCATTAGATAAAGAAATAGTAAGTATCAACTTTCAAGATATAACTAACAGCAACGACGCAAATCAGGCAACTGATCTCCTTGTCTCCCGTTTACAAACAGCCATTGAAAATAACTCCAAAACCATCAGAGTCCCCACgagaaaatttataaaaaaaccatGGATCACCAAGGGGCTGTTACGCTCAGGGATAGGTAAGAACTTGGCGGAACGGATCACAAATGGAAAGGATATCCATCGCGCATCTAGTGCTGAACATCCTCGCGCAACATCTTGTAACTCTTTTGTTATGCTGCCCACGGATGAGAATGAGGTCGAGTCTCTTATTTTAAGCCTGAGAGATAGTTGTGCTGTGGGAATTGACCTTATATCAAGTAAGATTATTAAACGCCACGTGCGAATACTTAAACCCGTGATAACACATATTTGCAACCTTGCTCTGAGCGCTGGCACTTTTCCGAAGGCTTTTAAGGCTGCACTGATTAAGCCAATCCACAAGGGAGGTGACGGAGACTGTGTCAACAACTACAGACCGATTTCAATACTACCGTCATTGTCAAAAATCCTGGAACGTCTAATGAATAATCGCCTGATAAATTTTCTGGAAAAAAACCGCCTCCTTTCGGAATCCCAATTTGGGTTCCGATCGGGTAAGTCAACGAATAACGCAGTCCATGAACTTATTAACTCCATTGTAACAAACATGGACAGAAAAAAGAAATGTGTCACGGTATTCCTAGACTTGGCTAAGGCTTTTGACACGGTTTCCGTCCCTCACTTGTTGGAAAAGCTTGAGAAAATCGGAGTGAGAGGCATTCCTTTGGAAATGTTTAAGGACTATCTTTCCAATAGAACGCAGCGAGTTAGGATAGGCAGTTGGACAAGTGACGAGGAGTCGGTCAGCTATGGAGTCCCACAGGGTAGCATTCTCGGCCCAACAATGTTTCTGGTCTACATTAACGACCTGTGTCAGCTGCAACTACAAAACGGGCAAATATTCTCCTTTGCTGACGACACAGCTCTCTTTTTCAATGGCGATAGCTGGGAGGACGTATTTGAATCGGCACAGATTGGATTTAATGAAGTCAGCTGGTGGTTGAGGAGTAATGTGCTGACACTTAATGTCCATAAAACCAGATATATTGCCTTCGCACACAGAAAAGATCTACTCCCGCCTGCTGGTCTTTCAATTACTGCACATTCTTGCTCTTCTAGTCCAGTAGCATCCTTATGCCAGTGCCCCTTGCTGCAAAGTACTGACACCATCAAATACGTCGGCATCATAGTGGATCAAACTCTCAGCTTTAAACCACACCTTGACGCACTTGTGATTCGATTGCGCAAGTTGATCTACATATTCAAAACTTTGAGACACATTGCTGATCGCCGGACAATATAA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHNYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPASTLETLESAPHNAKSVSLLDRHMEFMNVTEVPDSADFMPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQPNYANKYTNRIDFESLDKEIVSINFQDITNSNDANQATDLLVSRLQTAIENNSKTIRVPTRKFIKKPWITKGLLRSGIGKNLAERITNGKDIHRASSAEHPRATSCNSFVMLPTDENEVESLILSLRDSCAVGIDLISSKIIKRHVRILKPVITHICNLALSAGTFPKAFKAALIKPIHKGGDGDCVNNYRPISILPSLSKILERLMNNRLINFLEKNRLLSESQFGFRSGKSTNNAVHELINSIVTNMDRKKKCVTVFLDLAKAFDTVSVPHLLEKLEKIGVRGIPLEMFKDYLSNRTQRVRIGSWTSDEESVSYGVPQGSILGPTMFLVYINDLCQLQLQNGQIFSFADDTALFFNGDSWEDVFESAQIGFNEVSWWLRSNVLTLNVHKTRYIAFAHRKDLLPPAGLSITAHSCSSSPVASLCQCPLLQSTDTIKYVGIIVDQTLSFKPHLDALVIRLRKLIYIFKTLRHIADRRTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -