Basic Information

Insect: Agrochola lychnidis
Gene Symbol: -
Assembly: GCA_963680765.1
Location: OY796875.1:16906374-16918628[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.41 51 6.0 0.3 3 23 405 425 403 425 0.93

2 6 0.026 3.2 9.8 1.2 1 21 432 452 432 453 0.95

3 6 0.003 0.37 12.7 1.1 2 23 519 541 518 541 0.94

4 6 0.00036 0.045 15.6 1.1 2 23 549 571 549 571 0.96

5 6 0.042 5.2 9.1 7.5 1 23 578 601 578 601 0.94

6 6 0.00037 0.047 15.5 1.1 2 23 609 632 608 632 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.41	51	6.0	0.3	3	23	405	425	403	425	0.93
2	6	0.026	3.2	9.8	1.2	1	21	432	452	432	453	0.95
3	6	0.003	0.37	12.7	1.1	2	23	519	541	518	541	0.94
4	6	0.00036	0.045	15.6	1.1	2	23	549	571	549	571	0.96
5	6	0.042	5.2	9.1	7.5	1	23	578	601	578	601	0.94
6	6	0.00037	0.047	15.5	1.1	2	23	609	632	608	632	0.96

Sequence Information

Coding Sequence: ATGACTGACGAAAAAGCCATCCTTATCAAaggatataatatatattacacCAATCATCCTGATGGAACATCACACGCTGGGActgcaattataataaaagaaaGTATAAAACAGCACCCTCTCCCAAACTTTAAGCAAGCATACCTACAGGCTACTGTAGTATCGATAGACGACTGGCAGGGCCCAATTAACATCGCTGCAGTATACTCCCCGCCTCGGCATCGAGTCGACGAACAAATGTTTAGCGACTTTCTTAACACGCTAGGTGGCAGATATGTCGCTGGAGGGGATTGGAACGCCAAAAATATCTTTTGGGGCTCCAGACTGACCACGACCAGAGGCAGAGAGTTGAAGAAGGCAATAGATTCAGATTCACTCAATATACTGACTACAGGAGAGCCAACTTACTGGCCATCAGATCCCAACAAAACACCTGATCTCATCGATTTCTTTGTTACTAAAGGAATGTCTGGACTATACACAAAAGTCGAATCATGCCTGGACGGCAACTCTGATCATACACCAATTATATGCACACTGAGCACCACAATTATTTGTAAAGAGCACCGCGAGACGCTATACAATCGTAAAACTGACTGGGACTCATTCCAGAACTTTATAGAGGAAAATACCAACTTGCACATTCCCCTTAAAACAGAGGAAGACATAGAAAATGCAGCCTGGTATACAACGAACCTTATCCAAACAGCTGCTTGGATGTCTACGCCATGTATAAAATACAGTCCTCAAAAACAGGATTATACACTTAAAATAAGGGAGACGATATCTGAAAAACGGCGACTGAGACGACAATGGCACACAAGTAGGAACGCACATGATAAAAGAGTCCTCAACAAAGCACAAAAGGAATTAAAGGAAATGCTTAAAGGGCACGAAAACGCCACACTACAAGATAAACTAAAAACTTTATCACTTCACAAAGCAGACGACTATTCCCTATGGAAAATAACTAAGTCAATGAAACAGCCACAAGAACACATGCCTCCATTAAGACAACCAAATGGTGAATGGGCGAGGAAACCTGCGGATAAAGCGGAGCTATTTGCCGAATTCCTAAAAGATGTATTCAAACCAAATGAATCTGACATCATGGCACTGCTGGAGCTCGCACAATGCGTTCAAACGAACCAAGAACCGATAGAGTTCAACTCTACCGACGCGATGATGGATCCGAAGACCGGGCTCATGATCTGTCTCCACTGCCTGGAAGACTTTGACTCCTCCCTACTCTCCGAGCACATGATTAACGCACACAACTACCGAAGGGTGCTCTTCAAATGTCACGTCTGTCAGAATACGTTCCAGGAACGCAAACTCTTAATGATACACCGGCAGGAGTGCCAGCCCGAACAGAAAGTGCGCAAACGGAAAACGTTTCAGCAAATCATGCGCGAAGTCGAGGCTAAGTATTTCATGGAAGATCAAGAGGATTTGCTTGAGCCAGTAGCGTGTCCCATTTGCTTGTTAGAGTTACCGAAGTACTGTTTAAAAGAACATTTGTTGAATGAGCATCGGAAGCCAGATGTTATTCTGACGTGTGGGCGGTGTAACAGGAACTTCAAGTCGAAGCTAACGCTGAGAGAGCATGTCAAGCTGGTACATGAGGCGATTGAGGACTCGGAGGAGTGCGAGCTCTGTGGTCAGAAGTTCAGGTCGCTGAAGTATTTGTCTAATCACAAGAGGAATGTGCATCCTTCAGGCAACAAGATCCACAAATGCCAGGTGTGCGGCAAGGAGTTCAAGTCGCGCCTGTgcctgcaccagcacagcaAGTACGTGCACCCGCCCGAGTCGGCCATGGTGGAGTGTCCGCACTGCCCCAACAAGATGTTCAAGTCGCGGATCAATCTCACGCAGCATCTCAAAGTGTCACACGGCTGGAAGAGGAAGTGA
Protein Sequence: MTDEKAILIKGYNIYYTNHPDGTSHAGTAIIIKESIKQHPLPNFKQAYLQATVVSIDDWQGPINIAAVYSPPRHRVDEQMFSDFLNTLGGRYVAGGDWNAKNIFWGSRLTTTRGRELKKAIDSDSLNILTTGEPTYWPSDPNKTPDLIDFFVTKGMSGLYTKVESCLDGNSDHTPIICTLSTTIICKEHRETLYNRKTDWDSFQNFIEENTNLHIPLKTEEDIENAAWYTTNLIQTAAWMSTPCIKYSPQKQDYTLKIRETISEKRRLRRQWHTSRNAHDKRVLNKAQKELKEMLKGHENATLQDKLKTLSLHKADDYSLWKITKSMKQPQEHMPPLRQPNGEWARKPADKAELFAEFLKDVFKPNESDIMALLELAQCVQTNQEPIEFNSTDAMMDPKTGLMICLHCLEDFDSSLLSEHMINAHNYRRVLFKCHVCQNTFQERKLLMIHRQECQPEQKVRKRKTFQQIMREVEAKYFMEDQEDLLEPVACPICLLELPKYCLKEHLLNEHRKPDVILTCGRCNRNFKSKLTLREHVKLVHEAIEDSEECELCGQKFRSLKYLSNHKRNVHPSGNKIHKCQVCGKEFKSRLCLHQHSKYVHPPESAMVECPHCPNKMFKSRINLTQHLKVSHGWKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -