Alyc040149.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola lychnidis
Gene Symbol
-
Assembly
GCA_963680765.1
Location
OY796875.1:6825210-6851437[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00078 0.097 14.5 1.5 1 23 453 475 453 475 0.98
2 10 0.43 54 5.9 1.0 2 23 483 505 482 505 0.94
3 10 0.5 63 5.7 0.3 1 23 509 531 509 531 0.94
4 10 0.00044 0.055 15.3 1.0 1 23 536 559 536 559 0.97
5 10 0.0051 0.64 12.0 0.9 2 23 564 586 563 586 0.94
6 10 6.6 8.3e+02 2.2 0.0 2 23 672 694 671 694 0.86
7 10 0.034 4.3 9.4 0.7 1 20 709 728 709 731 0.89
8 10 1.9e-05 0.0024 19.6 3.7 1 23 737 759 737 759 0.98
9 10 6.3e-06 0.00078 21.1 2.4 1 23 766 788 766 788 0.96
10 10 9.4e-05 0.012 17.4 0.5 1 23 794 817 794 817 0.93

Sequence Information

Coding Sequence
ATGAAGTGTTGTATACAAAACTGTGGTAATAATGCCAAAGTGAAGAAAATAAGTCGGTCAAGTACTTCCATTTCAGAGAGGATCACTTTTCATTCGTTCCCAAAAGATCCGAAACAGCGCGTATCATGGCTGGAGTCCCTTGCCATACCTAACTGGGTGCCAACAAACAGAACCGTTTTATGTTCAGATCATTTTAAAGAAGATGACttctattttactaagcaaGGAACCAGGAGAATTAAGTATGGAGCCATTCCATCTATTGAAATCTGCAAGCTATGTCTTTCATTGGACGGCAAAATGTATCGATTAAATGATCACGGTTTGGACAAAATGTATCAAGATATTATGGGAATGGCGCCGAGAACGGACACAAACAACCGATTACCGATGGGTATATGTTGGGAGTGCACTGCACGGCTGCAGTCAGCCGCTTCATTCAGATCTAAAGCGCTATTCAGCGATGCATTGCTGCAAGATCATTTGAAGAACAATGCTGATCTAAAAATAAGCGACATACTTAGCATACATCGCACACACACTAATCTAAAATCAACATGGATCGTGCAAGAAGTGTTTAAATTCAACAGCCACAATATAGAAGAACATGCTCCGAACACGTTAATAAAAACTGAAGTTATAGGCATACCGCATAACGAAGAAATCGAGATAGAAGTACATAACTTAGTCACAGACAGAATTACTATAAAAGATGAACGAAAAAACGAAATCATTGAAGAGACTTATCATACCGCTGATGTAAAAACCGAAATCGATCTAATACCTATAACCGAAATTGGAATCGGTGAAAAACAAACCGATATTGAAGACGATGACGATGATTGCGATGTAGTTACAgaaaatatttatgtgaacGATGCTAAGTTAGGTTTTGATAATGTTGTCTTACTTAAGAATGAGGAAgagatagaaaaaaataatctctCTAAACATATAGGTGATACTgatgaaaatgatgaaaaaatGGATCTCTCTAAGAGTATAGACAGTGATGATGAGGACCAAGTAGCTTTAAATGATGATATTTCTGATGACGATGATCAAAGTTATGTAAATGATAAGATAATTACAAACGTCGCCAATGAAGCAATTGTTTGTATAGAAGAGAAAACAACTGCAGTTAAAAAGAAAAGAGCTGTTGTAAAAAGAAAGGCGAAGAAAGATGACGATGTTATTATATGGGTGAAGGGAAGGCCGAAGAAGAATAAACAGCCCTATGTAAAGCCAACTATACCGATTGACGAGAACGTTTTCAACGTAAAACCTTTGAATCACGATGAGTTGAGGCGGGAAGTACTTGAAAGACGGGAATGTGAAAAATATAGGCAGGCACCTTTCAAGTGTGATGTCTGTTTTAGAGGCTTCCCGACCAAGGACAAGCAACAAAGACATTTGATCAAGCATAGCGAGcaAAGCGGGTCGATAAAGTGTAGCATATGTTATGTCCGTGTGAAGAAAGGTAGACATTTGCGCGCGCACTGGAAAGGACAACACACGACGGAATTTACATGCAAACTGTGTCCGTTGGTCACAAGGAATAGaaACGTTGCATTAGGACACATGAAGTATCATGCTGGTAACAAGTATAAGTGTCCGCAATGCTCCCTTGAATTCGAGAAGAACACAACTTTATTAAATCATCTGCGTCTGAAGCACATGTCGGCCTGTGTCTGCGAACTGTGTGGTTACACATTTGTCAGTAAATTTGGTGTGGTGGCCCATAAGAGATTGAAACACAAATTCTTTGATAATAAtACTGTATTCAAGGGGCCAAACTGCGATGTTTGCGACGTCAAGTTCCTAACGACGAAGGCGTACGACAGACATCTGCACTTGTCTTCCAATCATATCAAGGAAGATGACCCTAACCGCATGAGCAACGATCCTTCTATAAAGTCGAGGCGACTCGGTTCATCCTGGGTGAACGCCGTCAGACGTCCAGTCATACATCGTAAGGACGTCAACAGTGTACCACCTCCGAATGGACCCGTTACTTGTGAAcagTGTGGCGTAGTGCTAGAAAGTCTCCGGGTATACGCTGCCCACTTCAAATACGCTCACCCGGGCATCAACCGTACGCAATTCACGGTATCGACGACACCTTACATGTGTGAGCATTGCGGGAAGTTCTTCCTGAACACGACCACCCTAGCCGGCCACATGTGGGTCCACACAGGTCAGAAACGTTTCCAATGTGACCACTGCAATAAATCGTTCAGTATGAAGGCGAACCTCGCTGGCCACATGCACCAGCACGAGCCCGTGCGCCGCACGTACGACTGTGGCGTGTGCGGCAAACACTTCACGTTCAGTTACAACCTCACCAGGCATTTGTTTGTCCACACCGGTCTAAGACCTTTCAAATGCGACGCTTGTGAGAAGACGTTCCGTACATCCGGCGAGCTGCGCTCTCATGTTGACTACGTTCATCTGAAGAAGCCGCGACCCAAGCGAGTGCGACGGAAGGGGAAGAAGTGTGAACTGACCAGCTTAGAGTATTGA
Protein Sequence
MKCCIQNCGNNAKVKKISRSSTSISERITFHSFPKDPKQRVSWLESLAIPNWVPTNRTVLCSDHFKEDDFYFTKQGTRRIKYGAIPSIEICKLCLSLDGKMYRLNDHGLDKMYQDIMGMAPRTDTNNRLPMGICWECTARLQSAASFRSKALFSDALLQDHLKNNADLKISDILSIHRTHTNLKSTWIVQEVFKFNSHNIEEHAPNTLIKTEVIGIPHNEEIEIEVHNLVTDRITIKDERKNEIIEETYHTADVKTEIDLIPITEIGIGEKQTDIEDDDDDCDVVTENIYVNDAKLGFDNVVLLKNEEEIEKNNLSKHIGDTDENDEKMDLSKSIDSDDEDQVALNDDISDDDDQSYVNDKIITNVANEAIVCIEEKTTAVKKKRAVVKRKAKKDDDVIIWVKGRPKKNKQPYVKPTIPIDENVFNVKPLNHDELRREVLERRECEKYRQAPFKCDVCFRGFPTKDKQQRHLIKHSEQSGSIKCSICYVRVKKGRHLRAHWKGQHTTEFTCKLCPLVTRNRNVALGHMKYHAGNKYKCPQCSLEFEKNTTLLNHLRLKHMSACVCELCGYTFVSKFGVVAHKRLKHKFFDNNTVFKGPNCDVCDVKFLTTKAYDRHLHLSSNHIKEDDPNRMSNDPSIKSRRLGSSWVNAVRRPVIHRKDVNSVPPPNGPVTCEQCGVVLESLRVYAAHFKYAHPGINRTQFTVSTTPYMCEHCGKFFLNTTTLAGHMWVHTGQKRFQCDHCNKSFSMKANLAGHMHQHEPVRRTYDCGVCGKHFTFSYNLTRHLFVHTGLRPFKCDACEKTFRTSGELRSHVDYVHLKKPRPKRVRRKGKKCELTSLEY