Alyc042242.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8702825-8704910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0062 0.77 11.7 0.3 1 23 85 108 85 108 0.95 2 12 0.84 1.1e+02 5.0 0.1 2 23 135 156 134 156 0.95 3 12 0.57 71 5.5 1.3 1 23 178 200 178 200 0.97 4 12 1.7e-05 0.0021 19.8 1.0 1 23 204 226 204 226 0.98 5 12 1.4 1.8e+02 4.3 0.2 1 22 231 252 231 254 0.77 6 12 0.007 0.87 11.5 0.6 1 23 260 283 260 283 0.90 7 12 0.0052 0.65 12.0 0.2 1 21 290 310 290 311 0.94 8 12 6.1 7.7e+02 2.3 0.4 1 22 359 380 359 381 0.69 9 12 0.0092 1.2 11.2 0.1 3 23 407 428 405 428 0.92 10 12 3.8e-06 0.00047 21.8 0.3 1 23 476 498 476 498 0.98 11 12 0.00046 0.058 15.3 0.1 1 23 503 526 503 526 0.97 12 12 0.0035 0.44 12.5 4.1 1 23 532 555 532 555 0.96
Sequence Information
- Coding Sequence
- ATGGTAGGGCAGAGGGCTATTCCAAGTATTTTTCTAGGTTCCGCTCACGAAGCGGAGAGGAATCTAGGCGTTAGACGCATTAGGAAGTTGAAGGAAAACGTTAGCGATCGCCAGATGCGAAGGCGACGACGCGCCAACAACCAGCTCCCCGAAGAATCAGAGAAAAGAATATCCAAAACCATGATGCGTCGAAACGCAATGATCCTTTTAGAATGTTCGACAGCCTGGGCCTTTCGATGGTTCCATAGCGCTTTTTACTGCTCATACTGCGACGCTAAGTTCGTCGATGTACCTTTTCTTCGCTCACATGTCAAAGCTAATCATCTAAATGACTTACCCACTGACAGAATCTTCTCGaagttaaaagaaaataatatggtCAAAGTCGATGTAGCTGAGCTTAGCTGTAGGTTGTGTACCAGGCTTCTAAATAGTATTGACGCCTTAAAAGATCACCTATTGATACACGGCAAGACTTTGAACGTAGAATACAGTGATGGGGTCCTACCTTTCAAGTTAGACGAAGAAGGCTTCACTTGCCAGCTGTGTTTCGCCCAATTCCTGACTTTCGCCAAAATGAACGAGCATATGAATACACACTTTCAAAATTACATTTGCGATTCTTGCGGAAAAGCTTTCGTTTCAAAATCAAGATTTAGAAAACACGTACAGTCACACGAAAAGGGGAGTTTCCCTTGCGGGGAGTGTGGTGAAGTTTTAGAAACACGAGCGTCTCGAATGTGTCATGTAATGCGAATCCATAGAAAAGGCGTTCGCTACGCTTGCCCGAGATGCCCCGAAGTTTTTACAACCTATCACACGAGAGCAAAACATTTAGTAGAAACCCACGCCCAACAGAGAAAGGAATACTACTGTAATGCTTGCgacaaaacttttgaaaccaGCTCCAAAAGAGCAGGACATATACgggcgatagaagaaaaagaaatgGCAGCAGGAAAGTCCACTACAATAGTTTGGAAGAGAAAACGCCGAATTAAAGAAGAAGCAGCAAATGCagctattataataaaacactCTAATGCAGTAGTATTCAGATTGCATAGAGGCAAATTCATGTGCGCTTACTGCCCAAAGATATGTTTAAACGTACCGGAAATTCGAGTTCATTCAATTACTCATGGGAAGCTCGAAATATTCGAGAACCCTGCTGTGAGAAACTCGTTTCCTCTTCGAATCGATATCACAGATTTAGCATGTAGTTTATGCGGCGAAAGTTTACAAAATATAGACAATTTGAAGACACATATAGCAGAGAAGCATTCACAGATGACTGACCCGGATTTTTCGGATGGTGTCATACCATTCGTTTTAACTGGCAAAGAATACAGATGCGTTCACTGCAGCTTCCTATGTGAAGGTTTCATGACTTTATTCACGCACATGAACCAACATTACCAAAGCTATGTTTGTCCTACATGCGGCAAAGCATTTTCGGGACGCAACAAGCTTCGTAGCCACCTCGTCACCCACGAATTTGGACAATTCAGTTGCCCAAAATGCGATTCAGTATTCCCTAATCGTGCTGCGAAGAACAGGCATTTGATCACAGCTCATGGAAGAAAAGATAGATATAGGTGTCCAGTTTGTGATCAACATTTTAGTCACTACCGTTCAAGACTGAGGCACTTAGATAAGGCGCATGGGCCAGAAAGTGGAGTACAGATTTAG
- Protein Sequence
- MVGQRAIPSIFLGSAHEAERNLGVRRIRKLKENVSDRQMRRRRRANNQLPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSAFYCSYCDAKFVDVPFLRSHVKANHLNDLPTDRIFSKLKENNMVKVDVAELSCRLCTRLLNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECGEVLETRASRMCHVMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYCNACDKTFETSSKRAGHIRAIEEKEMAAGKSTTIVWKRKRRIKEEAANAAIIIKHSNAVVFRLHRGKFMCAYCPKICLNVPEIRVHSITHGKLEIFENPAVRNSFPLRIDITDLACSLCGESLQNIDNLKTHIAEKHSQMTDPDFSDGVIPFVLTGKEYRCVHCSFLCEGFMTLFTHMNQHYQSYVCPTCGKAFSGRNKLRSHLVTHEFGQFSCPKCDSVFPNRAAKNRHLITAHGRKDRYRCPVCDQHFSHYRSRLRHLDKAHGPESGVQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623497; iTF_00037222; iTF_01441426;
- 90% Identity
- iTF_00037222; iTF_01441426; iTF_00623497;
- 80% Identity
- -