Alyc042177.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8094576-8098569[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.056 7 8.7 1.2 1 23 96 119 96 119 0.92 2 11 0.0037 0.46 12.4 0.3 1 23 217 240 217 240 0.92 3 11 0.037 4.6 9.3 0.0 2 23 267 289 266 289 0.96 4 11 0.00029 0.037 15.9 0.7 1 23 311 333 311 333 0.98 5 11 0.00021 0.027 16.3 0.3 1 23 337 359 337 359 0.98 6 11 3 3.7e+02 3.3 3.1 1 13 364 376 364 387 0.88 7 11 0.055 6.8 8.7 2.0 2 23 395 417 394 417 0.95 8 11 9.7e-05 0.012 17.4 2.4 2 23 425 447 424 447 0.95 9 11 0.00024 0.03 16.2 2.0 2 23 454 475 454 475 0.97 10 11 6.4e-05 0.0079 18.0 4.3 1 23 481 503 481 503 0.98 11 11 3e-05 0.0037 19.0 3.3 1 23 509 532 509 532 0.98
Sequence Information
- Coding Sequence
- ATGGAAACACGGAAAAACTTCTCAGCAGGTCTCGGCTGCGATACAGAAATTAATGTAGAAACAGATGTAAGTAAAATATTGAAAGCAATCAAAGCACCGAGATCTACAAAAGCAAAAGACAACAAAAATAACTGGAAGAGTAGCGATCAGGCGTTCGACGAAGAAATATTAAGAGTTCGCCCTCTTAAAGCAGACGAAAGAGAGATAGACAAACATTTGCAGAATATTCGTAACATACTCTTTTATTCTAATGCTACTCCTATCAAAAAACACACAGGGAATGGTTACTTGTGCGGCTTCTGTTCAGAGCACTTTATCATGCCGAATGACCTTAAGACACATACATTACAAAATCATGACAACGAAACTAAAAGTCTCGGCTGCGATACAGAAATTAAATTAGAAACTCatgtaagtaaaatattaaacGTACTGAATGCACCGAGATCTGCAAAaacaaacgaaaacaaaattgaCTGGGCGGTTCCAATCCCGAAACAAAGTAGCAATCTGTCGTGCAAAGAAGAAATATTAAGAGTTCGACCTCTTAAAGCGGGCAAAAGAGAGATAGACAAACATTTGCAGAACATTCGTAACATACTCTTTTGTTCTAATGCTACTCCTATCAGAAAACACACAGGGAATGGTTACTTGTGCGGTTTCTGTGCAGAGGAGTTTACCGTGCCGAGTGAACTCAAGAGACATACTCTACAAAAACatgacaacaaaataaaaagcactttcaTGAAAGGCCAGCCATTAACTTCCTACGTCGTTAAAATAGACATCACTTGTCTGAAGTGTGAAATATGCGGACAAGATATTGATGGATTAGAGCAACttataaatcatttacaatCTAAACACAATACAATTTTACATACAGATATAAAAAATCATATTCTGCCTTTTAAATTTGAAGGGGACATGTTCAGCTGCGTGCTATGCCCTAAATTTTACGAACGTTTTAAACTGCTACAAGAACATATGAACGTACACTATAACAATTATAACTGTGAAATCTGTAACTCTCCTTTCGTTAATAAGAGAACCCTTAACGGTCATATGGCGAGACACAAACAAGGAGAGTTCTCTTGTTCGTTTTGTTCAAAAGTATTTGGCACAAATGGCAAGAAATTATGCCACGAAAAATTTGTACATATAGGGGATCATAGAAGAAATAAATGTCCACATTGCCTCGAAAAGTTCACATCTTACGCTAAGAAAAATGAACACATGGTGAAGGAGCATGGTGCAGACCCTTGTGTCCTAAAATGTATGGCCTGTGACAAGACCTTTACCAGAAGAGACAGATTGACTCGACACACTAAACGGGATCACTTACTCGAAAGGAAAAATGAATGCGAGCACTGTGATATGAAATTTTATGGGAAGAAAGAACTGAATTTGCACATGTTAAAACATACAGGTGAAAAACAGCACAAGTGCGATGTCTGTTTCAAAGCTTTTGGTCGGAAACATACCTTAAGAGAGCATTTGAGAATTCATGCGGATGACAGGAGATTTAAATGTGAACAGTGTGGACAAGCGTTCGTGCAGAAATGCAGCTGGAAAAACCACATGAAATCAAGGCATGACGAGTTGGTATGA
- Protein Sequence
- METRKNFSAGLGCDTEINVETDVSKILKAIKAPRSTKAKDNKNNWKSSDQAFDEEILRVRPLKADEREIDKHLQNIRNILFYSNATPIKKHTGNGYLCGFCSEHFIMPNDLKTHTLQNHDNETKSLGCDTEIKLETHVSKILNVLNAPRSAKTNENKIDWAVPIPKQSSNLSCKEEILRVRPLKAGKREIDKHLQNIRNILFCSNATPIRKHTGNGYLCGFCAEEFTVPSELKRHTLQKHDNKIKSTFMKGQPLTSYVVKIDITCLKCEICGQDIDGLEQLINHLQSKHNTILHTDIKNHILPFKFEGDMFSCVLCPKFYERFKLLQEHMNVHYNNYNCEICNSPFVNKRTLNGHMARHKQGEFSCSFCSKVFGTNGKKLCHEKFVHIGDHRRNKCPHCLEKFTSYAKKNEHMVKEHGADPCVLKCMACDKTFTRRDRLTRHTKRDHLLERKNECEHCDMKFYGKKELNLHMLKHTGEKQHKCDVCFKAFGRKHTLREHLRIHADDRRFKCEQCGQAFVQKCSWKNHMKSRHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -