Alyc042252.2
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8735591-8752255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0091 1.1 11.2 0.1 3 23 250 271 249 271 0.93 2 18 0.025 3.2 9.8 0.1 2 23 297 319 296 319 0.95 3 18 0.00013 0.017 17.0 1.6 1 23 341 363 341 363 0.98 4 18 0.0058 0.72 11.8 0.5 1 23 367 390 367 390 0.98 5 18 0.024 3 9.9 0.6 2 22 396 416 395 416 0.95 6 18 0.22 28 6.8 3.0 1 23 423 446 423 446 0.96 7 18 0.028 3.5 9.7 2.0 1 23 453 475 453 476 0.95 8 18 0.036 4.5 9.3 2.0 2 23 482 503 482 503 0.97 9 18 1.4 1.7e+02 4.3 0.1 3 23 561 582 559 582 0.87 10 18 0.093 12 8.0 0.2 2 23 609 631 608 631 0.91 11 18 1 1.3e+02 4.7 1.7 2 23 654 675 653 675 0.91 12 18 2.4e-06 0.0003 22.5 2.2 1 23 679 702 679 702 0.93 13 18 6.8 8.5e+02 2.1 0.0 5 20 710 725 707 727 0.86 14 18 0.13 16 7.6 6.3 1 23 734 757 734 757 0.94 15 18 0.002 0.24 13.3 2.9 1 23 766 789 766 789 0.95 16 18 0.00085 0.11 14.4 0.5 1 23 794 816 794 816 0.96 17 18 0.015 1.8 10.5 3.6 1 20 822 841 822 844 0.94 18 18 0.0019 0.23 13.4 6.4 1 23 850 873 850 873 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTAAAACTACGGAATGGCGAGCCGGCCCAAGTGTTTGTCGCTGTTGCCTAACGGAGGGGTGCTACAAAGACATTTCTACTGAATATTTCTGGATGGGAAAGCGTGAGGTGTATGCTGAAATGCTTTTAGACTCCCTCAATGTTTCAATTGCATACTCTCAATCCGGTGGTCCAAACAGCAACAGTCGTCTTATCTGTGAGCTGTGTATATCTCGGCTGCGGGACGCTTCAGACTTTAAGCGGCAGGTGCTTGAGTGTGAGAAGACTTTCATGCAACACTTGGATGCTAGCAGCTCTACGCTTCCGGAACTAGAAGTTCAAGTGGAACAAATAGACTCAGACGTCAAATTGGAGCGAGTGAAGCAAGAGAAGCAGCTGAGCGATGATGATGACTTTGATGACCGATGTGgctttgatgatgatgatgatgaccTTGACGACCAACCCCTCACGAAATTAGCAAGTAAAATACCCAAAAAGGAATCCGTAGACTTATTAGACCTCCTGGACAATACGAAGGCAACAGCAAAACGAAAATCTTCCACTAAAACAAAATCGGTGCCCGCAAAAAAAACTAAGACTGTGAAAAAGGAGCCCGTTAAAGCAAGCGCTAGCAAAGTGCCCGCTAAAactgagaaaaagaaaaaagcgGAAAGCTATGATGCGACGCGCGCAAACGCCGAGACAGTAATCAGTAGCACAACTGCTTACCCCTTCCGAGTGAACGATAAGTCGATACTTTGTGTCTACTGCCAAGAGTTGTTCGAAGACCCTGACGAGTTCCGAAGACACATGGACGGAGAACACGACTACTTTAGCATTAAAGTCGCGTTCCATCACCTCCCAAAAACGGAATTCATTAAAGCCGACCTCACGAATTTACGCTGTCGGATATGCAACACCGGTTTTCCGACCCTAGAAACGGTTTTGGCTCATTTAGACACCGAACATGGCAGGAAAACTGATCCCGCTGGCAAATTTGGCGTCATGCCTTATTTACTGCAGAAGGACGTCTATAATTGCGCAGTTTGCGAGAAAAACTTCCCGTCGCTTTTCCACTtaaaccgtcacactatcacaCACTTTCTAAGCTACGTTTGCCACGTTTGTGGTAGCAGTTATGTAGCAACAACTGGCCTCTTAAGACACGTCAGATCCAAACACCAGATTTACGAAGTATCCTGCAAAAGATGCAAGAAAGTGTTCCCGACAATGGAAGCGAAAGAAAAGCATAGGCGAACGCAAAAATCTTGCATGCCGTACTGCTGTCCGAAATGCCAAGAACGGTTCCTTGATTATAAAACCAGAAAAAAGCACATGGAAATTGCACACGGTCAGTCGAAACGCACGTATCGTTGCGTGGACTGCAATATTGAATTTACGACAGAAAATGCGTATTATGACCATTTTAAACTACATCATTCTGAAGACTGTGCGGTCTGCAAGCATTGCGGCTTGAAGTTCTTGTCGGTTTATCGTTTGAAGCGGCATATTGCGAAACACAATCATGACGCATGCGCGGCAAAGCGCGTCTCCTACCAAAATAAATGTGACAAAGGACCATTTCTTTTTGTTCTAGAGATCGATCCGTTGGTCAAAGCGAGACAAAACGCTAAGCTCATTTTGAGGTACACTACGATTTATCCATTCAGGATCCCCGCTAATGAAATGGTGTGTGTTTACTGCTGCGACGCCTTTGAAGACCCGGCGGCGTACAGAGAACACATGAGAAACGAGCACTCCCAACCCAACGTCAACCGCGCGTTCACGCACACCATGGGGATAACGGAATTTCTCAAAGTTGATTGCACAGACTTAAGTTGCAAGCTCTGCGAAAAAAAATTCGACTCCCTAGCTTCTATATCTGAACATCTCGTCTCGGAACACAACAAGAATTTAAATCTTAGCATGGAGATCGGGTTACAGATTTTTAAATTAGGCCCCGAAAGATGGGTGTGCGCCACTTGCTTCCAAAAGTTCCCGTCACTCAGATGTTTGTCTCGGCATAATAGCGGACACTACCACAAGTACACCTGCGAGCATTGCGGCAAATCTTACATCAGTCGAGATAATCTGAGGAAGCATGTCCTCTTCAGCCATTCCAAGGAAAAGATATGTATTAAATGTAGAAAGTCCTTCCCTAATATTGAGGAGCGCCGCGCTCATGTTTTGGCGAGCAAACGGTGCTGGCCTTACTGCTGCAACGTATGTGGCCACAGATTCGTCTCCAAAAAGCTCAGATGCGACCACATGACCGAAGTCCACAATGTAAAGAACACAAACAAGCTTCACACGTGTCCAGTATGTCAAGAATGTTTCAAGGAGTATAGTCTGTATAGAGCACATTACATCATTACCCATACTGACGCCAACTATGTCTGTCAATTCTGCGGGGAGAAATTCGCGAGCAAAAGCCGCTTGGAAGGTCATAAACTGTTGCATACGAGAGAGAAACACTTCCATTGCACTTCCTGCACTAAATCATTTCTTAGGAAAAAGAATTTGACGCAGCATATGTGGATTCACAATGAAAATAAGAGATTTCACTGTACTTTGTGCAACAGGCACTTTAATCAGAGAGTTAGTTGGAAGACTCATATGAGGTCTAACCATCCAGAGTTGGTCAATTTTTGA
- Protein Sequence
- MEVKTTEWRAGPSVCRCCLTEGCYKDISTEYFWMGKREVYAEMLLDSLNVSIAYSQSGGPNSNSRLICELCISRLRDASDFKRQVLECEKTFMQHLDASSSTLPELEVQVEQIDSDVKLERVKQEKQLSDDDDFDDRCGFDDDDDDLDDQPLTKLASKIPKKESVDLLDLLDNTKATAKRKSSTKTKSVPAKKTKTVKKEPVKASASKVPAKTEKKKKAESYDATRANAETVISSTTAYPFRVNDKSILCVYCQELFEDPDEFRRHMDGEHDYFSIKVAFHHLPKTEFIKADLTNLRCRICNTGFPTLETVLAHLDTEHGRKTDPAGKFGVMPYLLQKDVYNCAVCEKNFPSLFHLNRHTITHFLSYVCHVCGSSYVATTGLLRHVRSKHQIYEVSCKRCKKVFPTMEAKEKHRRTQKSCMPYCCPKCQERFLDYKTRKKHMEIAHGQSKRTYRCVDCNIEFTTENAYYDHFKLHHSEDCAVCKHCGLKFLSVYRLKRHIAKHNHDACAAKRVSYQNKCDKGPFLFVLEIDPLVKARQNAKLILRYTTIYPFRIPANEMVCVYCCDAFEDPAAYREHMRNEHSQPNVNRAFTHTMGITEFLKVDCTDLSCKLCEKKFDSLASISEHLVSEHNKNLNLSMEIGLQIFKLGPERWVCATCFQKFPSLRCLSRHNSGHYHKYTCEHCGKSYISRDNLRKHVLFSHSKEKICIKCRKSFPNIEERRAHVLASKRCWPYCCNVCGHRFVSKKLRCDHMTEVHNVKNTNKLHTCPVCQECFKEYSLYRAHYIITHTDANYVCQFCGEKFASKSRLEGHKLLHTREKHFHCTSCTKSFLRKKNLTQHMWIHNENKRFHCTLCNRHFNQRVSWKTHMRSNHPELVNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908201;
- 90% Identity
- -
- 80% Identity
- -