Alyc040234.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796875.1:8136784-8156120[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.092 11 8.0 0.8 1 23 129 152 129 152 0.91 2 11 0.01 1.3 11.0 0.1 1 23 159 181 159 181 0.98 3 11 1.3 1.7e+02 4.4 0.9 1 10 185 194 185 208 0.77 4 11 0.56 70 5.6 2.3 1 23 215 237 215 237 0.82 5 11 7.8e-06 0.00097 20.8 1.1 2 23 242 264 241 264 0.93 6 11 1.2e-05 0.0015 20.3 1.0 1 23 270 292 270 292 0.97 7 11 0.013 1.7 10.7 1.5 2 21 304 323 304 328 0.93 8 11 2.7e-05 0.0033 19.2 2.0 1 23 336 359 336 359 0.94 9 11 0.00073 0.091 14.6 0.7 1 23 364 387 364 387 0.98 10 11 1.4e-06 0.00018 23.2 3.1 2 23 395 416 394 416 0.97 11 11 1.9e-06 0.00024 22.8 1.3 1 23 422 445 422 445 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAATTAACTATTCTACTGATGAAAGAGCACGAAAAAGGGAGCTGGCTAACGCACGAATGCGAAGATATCGTAATAAGAAGCGTAAACAACAATTGGATTCTAAGCTCCAGAATGACCCTGTGATGGAGGAAatactaagaaaaaaaattgaagaagaAAAGGCCCATCAACGGAAAGAATGTGCCAAGGAACGTGCAAGAAGATATCGTGAAAAGAAACGTATCAATGCTCTGAACACTGTTGACTTGATTCACGACTCACAAcCTAAACCTACAAAAGAACGAGACCAAAAGATCCTAACCATAGAGCTGACGTACGAAGAGATGCTGTTAGAAAGAGACAAAGAATCAAGCAAAGACACGTACTTGAAGGCGGAGTATAAATGTGAGAACTGTCTGATTGGGTTCAACTACAGGAAGTCATATTCAACTCATGTTGCGGCCAAGCATTCAGCTgAACTAGGCGACTATATCTGTCCTatttgcaaaacaataatacCTTCAGTGGAGTCATTTACGGCGCATTATAAGAGGCATATGAGAAGGTATGAATGTAGTATTTGTCACAAAAGAACATTGGACGTAAAAGTGATGCAACAACATTATTACTCAACCCATGAAATATCATTGAAggaatataaatgtaatttatgcGGGAAAATATCGAATTCCATAGACACTCACCGATATCATAAAGACACGCACAAAGCCAGAGTACAATGCACAGAGTGTGACAAAACATTCAGACATAGAGCGGGACTCAAGAACCATAGACTggCAGTGCATGAATACCGCAACACGTTTCCTTGCACCATATGTGATAAAGTGTTCCGATGGAAAACTAGTTTGAAGAGACATTTAGAGAAACATGAAGTTAAGGGTAAGTCTTCAACAGCGGCAGCATACTGTACCATGTGTAAGGTCAGCTTTTCGTCCATATTTTCTTATCAAAGACACTTGAAGAATAGCCTGAAACATGTGTCGCAGGATCAGCTCAAattcATCTGTGATCATTGCAACAAACGTTTTGCCGACAAAACAAAACTCAGAGACCACATAGAAGAGAAACACTTACACAAGACTTATCAATGTCACATTTGTCTGAAGCCTTCTAAAAATCGTGTTGGTTTAGACCAGCACATACGGAATGTGCACAAAGGAAGACCGAATAATAAAATGTGCCATCACTGCGGTAAAGGGTTTCCTACAAAGGTCCAGTTAGAATCTCATATTCGTTCGCACACCGGCGAAAGACCTTTTATATGCGAATACTGCCCGACCACATTCTCACAGCAATCCAACTTATATAAACATAATAGACAGgTACATCTCAACATTAAATCCAAACGATATCCTATGTGTAAGAAGAAGGAAGAGAAACCGCCAGACGTGCCCATATTAGACCTTGTTCAACCCATTGACACTTATAGGCCGGTGCCCATGTTACACTATACTGCTGAAAAAGTTTTTGGAATGTGA
- Protein Sequence
- MDEINYSTDERARKRELANARMRRYRNKKRKQQLDSKLQNDPVMEEILRKKIEEEKAHQRKECAKERARRYREKKRINALNTVDLIHDSQPKPTKERDQKILTIELTYEEMLLERDKESSKDTYLKAEYKCENCLIGFNYRKSYSTHVAAKHSAELGDYICPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDVKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLKNHRLAVHEYRNTFPCTICDKVFRWKTSLKRHLEKHEVKGKSSTAAAYCTMCKVSFSSIFSYQRHLKNSLKHVSQDQLKFICDHCNKRFADKTKLRDHIEEKHLHKTYQCHICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTKVQLESHIRSHTGERPFICEYCPTTFSQQSNLYKHNRQVHLNIKSKRYPMCKKKEEKPPDVPILDLVQPIDTYRPVPMLHYTAEKVFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037133;
- 90% Identity
- iTF_00037133;
- 80% Identity
- -