Basic Information

Insect: Agrochola lychnidis
Gene Symbol: -
Assembly: GCA_963680765.1
Location: OY796861.1:14566418-14588028[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00047 0.058 15.3 0.2 2 23 144 165 143 165 0.93

2 10 0.00068 0.084 14.7 2.4 1 23 171 193 171 193 0.96

3 10 7.7e-05 0.0096 17.7 0.3 1 23 285 307 285 307 0.98

4 10 0.0007 0.088 14.7 0.0 3 23 386 407 384 407 0.90

5 10 0.0035 0.43 12.5 0.0 1 23 422 444 422 444 0.93

6 10 1.6e-05 0.002 19.8 0.2 1 23 479 501 479 501 0.98

7 10 0.00072 0.09 14.7 0.2 1 23 507 529 507 529 0.97

8 10 0.00041 0.051 15.4 0.3 1 23 535 557 535 558 0.95

9 10 0.011 1.4 10.9 1.1 1 23 571 593 571 593 0.96

10 10 0.033 4.2 9.4 0.0 1 20 731 750 731 753 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00047	0.058	15.3	0.2	2	23	144	165	143	165	0.93
2	10	0.00068	0.084	14.7	2.4	1	23	171	193	171	193	0.96
3	10	7.7e-05	0.0096	17.7	0.3	1	23	285	307	285	307	0.98
4	10	0.0007	0.088	14.7	0.0	3	23	386	407	384	407	0.90
5	10	0.0035	0.43	12.5	0.0	1	23	422	444	422	444	0.93
6	10	1.6e-05	0.002	19.8	0.2	1	23	479	501	479	501	0.98
7	10	0.00072	0.09	14.7	0.2	1	23	507	529	507	529	0.97
8	10	0.00041	0.051	15.4	0.3	1	23	535	557	535	558	0.95
9	10	0.011	1.4	10.9	1.1	1	23	571	593	571	593	0.96
10	10	0.033	4.2	9.4	0.0	1	20	731	750	731	753	0.93

Sequence Information

Coding Sequence: ATGGATGGGGAAGCCGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCAGGTGTCGTTGAGACAGAGGAAGTGATAACAGGCCTAGATAACGTGCAGCACACAGAATATTCCAACATGACAGCTGAAGAGATGATGAGCACGGACCAAATGGCTGCGGAGAACTTAATGTTTTTATCTCAAGATGTAGTGAGCTATACAGAGACAGCCGAACTGGCTGATGATCCTAGCGTGGAGTGTGTTACCGAAGAGGTCATTACAGACGATTGGGTGATTCCTGGTGGGCAGGAAAGGTACCAagttGAAGTTCCTATGGATCATCTGAATAACGCTGATCTGGTTCTGAAGGAAGAAAATGATCTTGATGTTCCCTTACCAACAGATCAAGATGAATACACAGCGATGCGTCCGTGGCCCTGCGACTTTTGTTCGCGGCGGTTCCGTAAGAAGGCCGCTCTCATGAATCATATGGTGGCCCATCAGAACGACCGGCCGCATGCGTGCAATCTGTGCGGCGTGCGGTACGTGCGCAAGTGTGACCTTATGAACCATCTCAAGGTTCACGCCTTTGTGCCTGAAAACACCGATTCTATAGATTATGAGGATGTTTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGTCGACGGAAAAAGAATCCTGAGCCGGTCGAGGAGAACGGCATGTGGGAGAACATGACGTCAGCGCGCACACAGCAGTGGTCGCGGCGCGCGCGCTCGCCGGCGCGCCCCCCTCCCTCGCCGCcctcgcccgcgcccgcgccccccgcgcccgagccgccgccgccgcccagcGACCCCTCGCGCCCCTTCGTCTGCAGGCACTGCGGCGTCGGCTTCGCTAGGGAGAAGGCTTTGCAGTCACATGCCAGGGTGCACGGCGGCGACTCGCCAGTGGAGTGCGGCTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGCACGCGGCCTCGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCCTACGAAGACTCCGACTCGGGAGACGACATGGAGTTCCGTTTATCCCCGCTGTCACACGGGACGTCTGATCGCGCGGTGTACGATACGATGCGCGGCCCCGAGCTGTTCTGTCAGGACTGCGGCGTCGCCTTCCAGCGAGCCGACCTGCTGCGAAGACACGTGGCTGCAGCACACAGTTACAAGCGCCACGACAGTTCGAGCAGCACGTGGGCGGAACACACGTGCGACGTGTGCGGCGAGGGCTTCGCCGACGCGCTGCAGCTGCTCGCGCACGCCGAGGGACACGCCGAGCGACACCGCGCGCCGCACGCGTCGCACGCGCAGCCCAGGTTAAAAAGAATGGCTAGAGGTCGAAATAATACATCATCATCGAATAATTCACGGCAATTCCCTTGTCGAGTATGTGGCAAAGTGTTTGGTTCGCGGAGCTCGCAACAGATTCACATCCGTATCCACACGGGCGAGCGTCCTTACGCGTGTCGTTTCTGCTGGAAAGCGTTCGCAGACGGTGGCACGCTACGGAAACATGAAAGAATACATACAGGCGAGAAGCCGTACGCATGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTAGTTCTACGTGAACATGTTCGCTCGCACCACTCCGCTCCCGACCGGCGCGCTAACGGTGGCCCCGCCTACTGTTGTGTAGTGTGTGGGCGCACGCTGCATTCGAGCGCGGAATTGGTGCAGCACCTCATACAGCACTGTGACGCTAACACGGCGCTCAAGAGACAACCCCAGACGGGACCGCGGAAGTACAAGAGACGACGAAAACTGAAGACAGAGTCTCCGGCGACACCGCGCGAGTGGGAGCGCACCTCCCCCTCCCCTCCGCCCGCCTCGCGCTCCCCCTCGCCTGTCTCGCGCACCTCCGACACGCCGCACCTGTCGCCCGCCTCGCCGCCGTCGCCGCCGTCGCCCGCGTCGCCCGtgcggcgccgccgccgccgcgcgccgtcgcccgcgccgcgcccgcgcaTGATCCACACGGCGGCGCGGGCCAGCCCGGGCGCGCGCCGGCGCCGCACCGcgtcgcccgcgccgcccgcgcggCCGGTCCGGCGCCGCGCGCGCGCCCCCCCGCCGCCGTCGCCGCCGCCGGACGCGGCGGGCCCGTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGTGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
Protein Sequence: MDGEAEDFNLQWEEEVEVKHSPGVVETEEVITGLDNVQHTEYSNMTAEEMMSTDQMAAENLMFLSQDVVSYTETAELADDPSVECVTEEVITDDWVIPGGQERYQVEVPMDHLNNADLVLKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPENTDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPARPPPSPPSPAPAPPAPEPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALAAHAASRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGTSDRAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFADALQLLAHAEGHAERHRAPHASHAQPRLKRMARGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTESPATPREWERTSPSPPPASRSPSPVSRTSDTPHLSPASPPSPPSPASPVRRRRRRAPSPAPRPRMIHTAARASPGARRRRTASPAPPARPVRRRARAPPPPSPPPDAAGPYKCEMCALEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01064911;
90% Identity: iTF_00925081;
80% Identity: -