Alyc037803.3
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796872.1:18996577-18999331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.014 1.8 10.6 1.7 1 23 237 260 237 260 0.97 2 18 1.4e-05 0.0017 20.1 1.8 2 23 264 285 264 285 0.97 3 18 0.0054 0.67 11.9 3.6 2 21 291 310 290 316 0.92 4 18 4.5e-06 0.00056 21.6 0.1 2 23 327 349 326 349 0.95 5 18 0.088 11 8.1 0.5 3 23 357 377 355 377 0.95 6 18 0.00027 0.034 16.0 1.3 1 23 383 405 383 405 0.98 7 18 0.23 28 6.8 3.3 1 23 411 433 411 434 0.92 8 18 4.9e-05 0.0061 18.3 2.8 2 23 440 461 439 461 0.97 9 18 3.8 4.7e+02 3.0 1.0 2 23 562 584 561 584 0.94 10 18 1.5 1.8e+02 4.2 1.3 2 23 624 646 623 646 0.95 11 18 0.036 4.5 9.3 1.1 1 23 651 674 651 674 0.91 12 18 2.2e-05 0.0028 19.4 0.7 2 23 678 699 678 699 0.95 13 18 0.00086 0.11 14.4 0.7 2 21 705 724 704 725 0.92 14 18 1.9e-06 0.00024 22.8 0.2 2 23 741 763 740 763 0.96 15 18 0.36 45 6.2 1.2 3 23 771 791 770 791 0.96 16 18 9.9e-05 0.012 17.4 1.0 1 23 797 819 797 819 0.98 17 18 0.55 69 5.6 2.9 1 23 825 847 825 848 0.91 18 18 0.097 12 8.0 2.7 2 23 854 873 853 873 0.96
Sequence Information
- Coding Sequence
- ATGCCAGTTTTAAGTTGTATACTTCGTAATGTTTTGTCTGATAAGTCGGACTGTTGTTTCTTGTGCTTCAATGCAATAAGCGAAATTGAAACAACCTATAATATTGAAGACGAGGTTTCTTTAGGCATTGATATCGAAACGACTGAAGTGTTGTATGAAATAATATACACTGTTTTAGGAGCTAAGGTCTTGGACAGCATTTCTGCACATGATAAGATTTGCCAGAAGTGTACAGGAACAGTTATAAATTGTTATAAGTTCATTCAACAATGTAGACAAAATGTAGAGCAGTTGCATTGTGCCATAGATTCCCTACAGAAACATGCCCAAAATATAAGTTCAGGAAACTATGATAacaattcattattttttgttttggacACTAGTAACTATAATGTGGAATTGTATGATAAACACCGAAACATCAATAATCAAATTTTATTATGTAAGAGATTTCAAAGAATATACAAAGAAGATTCCCAAcaaatttattttgatattgATGTTGAGTCAAACAACAGTCTTGATGATAAAAACTGTGCTGTGAAAAGAAGAAAACAAAGTAGTGTATTGCAATCAATTGAAATTGCTCACATAGTTCATGATAAAGATGACCTAAATAatctaaaatgtaaaacatGCTTGAAATTGTGTCCAACAGTCATGAAAATGAAACAGCATTACTTAAGAGTGCATGCACCCAAAGATTTTAAATGCTCTCAGTGTCCAAGACGTTTTGGGTCTTCATTAATTCTGAAACGGCATACAAAAGTCTTTCACTGTACTGCGGTTTGCAGCCAATGTGGCAAAACATACACCAACCTTTTCTCACTAAGACGTCATGAAAGAAGACACAGCAAGTTATGCCTTGTTTGTCACACATGCGGTAAGGTGTATAAGGGAAAGCAATCATTCAATAACCATATTGAGAAGAAGTTGTGTCATAAGATGAGAAAGTCAAATGCAGAAGCAAAGCTGACCTGTGATTATTGTGGAAAAAAGTATGCACAAAAAGCAGCTTTAAATGTTCACATCCGCTTGGAACATTTAAATGGTAAAGCTGTGATATGTGACTGGTGCGGTAAGAAATTTGGTTGTATGAGCCGGTTAAAGGAACATATTTTAATACATACAAAAGAGAGGAATTTTGAATGTGAACGGTGTGGAGGAAAGTTTGTAACAAAGAGATCATTGCTGTATCATACAAGAACGCATACAGGTGATAAGCCATATAAATGTGATCAATGTGAAAGGACATTTTTATCTCCTTCTCGTCGCTCTGAACATTTGAAGAGACATCATGCACAATCTATCGTAGAATGTGATATCTGCCATGGTAAATTTAAGGATAATTCATATCTAAATAAACACAGGAGAAAACATTTTGATGTTAGAAGTAGATTATATTCTAACACTCCAGCTTCAGTAACTTCAGCAGCTTCAGACACTAGTAACTATAATGTCAAATTGTGTTATGATAAACCCCAAAACATCAATAATCAAACTTTATTATGTAAGAGCTTTCAAAGAATAAACAAAGATTTCCAACAAATTGAAATTGAAGTAGAGTCAAACAATAGttctgataataataattacgctTTGAAAAGAGGGAAACAAAGTATATTGCAATCTATTGATCTTGCTCACATAGTTCATGATAAAGATGACCTAAATAatctaaaatgtaaaacatGCTTGAAATTGTACCCAACAGTCACGAAAATTAAACAGCATTACTTAAGAGTGCATGCACCCaaagattttaataataaaaactgtgCTGTGAGAAGAAGAAAACAAGGTAGTGTATTGGAATCAATTGAAATTGCTGACATAGTTCATGATAAAGATGACTTAAATAatctaaaatgtaaaacatGCTTGAAATTGTATCCAACAGTCACGAAAATGAAACAGCATTACTTAAGAGTGCATGCACCCAAAGATTTTAAATGCTCTCAGTGTCCAAGAAGTTTTGGGTCTTCATTAATTCTGAAACAACATACCAAAGACAGTCACAGTACTGCTGTCTGTAGCCAATGCGGCAAAACATACACCAACCTTTACTCATTAAGACGTCATGAACAAGGACACAGCAAGTTACACCTCATTTGTCACACATGCGGTAAGGTTTATAAGGGAAAGCGATCATTCAATAACCATATTGAGAAGCAGTTGTGTGAAAAGATGAGAAAGTCAAATGCGGAAGCAAAGCTGACCTGTGATTATTGTGGAAAAAAGTATGCACAAAAAGGAGCTTTAAGGGTTCACATCCGCATACAACATTTAAATGGTAAAGCTGAGATATGTGACTGGTGCGGTAAGAAATATGATTGTATAAGCCGGTTAaaggatcatattttaaaacatacaaAACAGAAGAATTTTGAATGTGAACAGTGTGGAGGAAAGTTTGTAACAAAGACATCATTGCTGTATCATACAAGAACGCATACGGGTGATAAGCCATATAAATGTGAACAATGTGAAAGGACATTTTTGTCTGCTTCACGTCGCTCTGAACATGTGAAGCGACACCATACAAAGTCTAACGTAGAATGTGATATCTGCCATGAAAAGTTTAAGGGTAGTTTAAGTCGACACaggaaaaaacattttaatgttaGAAGTAGATTATATTGCAACCCTCCAGCTTCAGTTGTTTAA
- Protein Sequence
- MPVLSCILRNVLSDKSDCCFLCFNAISEIETTYNIEDEVSLGIDIETTEVLYEIIYTVLGAKVLDSISAHDKICQKCTGTVINCYKFIQQCRQNVEQLHCAIDSLQKHAQNISSGNYDNNSLFFVLDTSNYNVELYDKHRNINNQILLCKRFQRIYKEDSQQIYFDIDVESNNSLDDKNCAVKRRKQSSVLQSIEIAHIVHDKDDLNNLKCKTCLKLCPTVMKMKQHYLRVHAPKDFKCSQCPRRFGSSLILKRHTKVFHCTAVCSQCGKTYTNLFSLRRHERRHSKLCLVCHTCGKVYKGKQSFNNHIEKKLCHKMRKSNAEAKLTCDYCGKKYAQKAALNVHIRLEHLNGKAVICDWCGKKFGCMSRLKEHILIHTKERNFECERCGGKFVTKRSLLYHTRTHTGDKPYKCDQCERTFLSPSRRSEHLKRHHAQSIVECDICHGKFKDNSYLNKHRRKHFDVRSRLYSNTPASVTSAASDTSNYNVKLCYDKPQNINNQTLLCKSFQRINKDFQQIEIEVESNNSSDNNNYALKRGKQSILQSIDLAHIVHDKDDLNNLKCKTCLKLYPTVTKIKQHYLRVHAPKDFNNKNCAVRRRKQGSVLESIEIADIVHDKDDLNNLKCKTCLKLYPTVTKMKQHYLRVHAPKDFKCSQCPRSFGSSLILKQHTKDSHSTAVCSQCGKTYTNLYSLRRHEQGHSKLHLICHTCGKVYKGKRSFNNHIEKQLCEKMRKSNAEAKLTCDYCGKKYAQKGALRVHIRIQHLNGKAEICDWCGKKYDCISRLKDHILKHTKQKNFECEQCGGKFVTKTSLLYHTRTHTGDKPYKCEQCERTFLSASRRSEHVKRHHTKSNVECDICHEKFKGSLSRHRKKHFNVRSRLYCNPPASVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037103;
- 90% Identity
- iTF_00037103;
- 80% Identity
- -