Basic Information

Insect: Agrochola lychnidis
Gene Symbol: -
Assembly: GCA_963680765.1
Location: OY796864.1:3332924-3343026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00057 0.071 15.0 1.1 1 23 268 290 268 290 0.98

2 13 0.0018 0.23 13.4 1.3 2 23 298 319 297 319 0.94

3 13 0.91 1.1e+02 4.9 0.3 1 23 323 345 323 345 0.94

4 13 0.00063 0.079 14.8 1.0 1 23 350 373 350 373 0.98

5 13 0.0064 0.8 11.7 0.2 1 23 377 400 377 400 0.94

6 13 0.0068 0.84 11.6 0.3 2 20 412 430 412 436 0.93

7 13 0.0011 0.13 14.1 1.8 3 23 446 467 446 467 0.98

8 13 0.22 28 6.8 0.7 2 23 487 509 487 509 0.97

9 13 8.2e-05 0.01 17.6 0.9 1 23 520 542 520 542 0.97

10 13 2.7e-06 0.00034 22.3 2.0 1 23 548 570 548 570 0.99

11 13 2.1e-05 0.0026 19.5 0.4 1 23 576 598 576 598 0.98

12 13 0.00058 0.073 14.9 2.4 3 23 610 630 608 630 0.94

13 13 1.3e-05 0.0016 20.2 0.4 1 23 636 659 636 659 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00057	0.071	15.0	1.1	1	23	268	290	268	290	0.98
2	13	0.0018	0.23	13.4	1.3	2	23	298	319	297	319	0.94
3	13	0.91	1.1e+02	4.9	0.3	1	23	323	345	323	345	0.94
4	13	0.00063	0.079	14.8	1.0	1	23	350	373	350	373	0.98
5	13	0.0064	0.8	11.7	0.2	1	23	377	400	377	400	0.94
6	13	0.0068	0.84	11.6	0.3	2	20	412	430	412	436	0.93
7	13	0.0011	0.13	14.1	1.8	3	23	446	467	446	467	0.98
8	13	0.22	28	6.8	0.7	2	23	487	509	487	509	0.97
9	13	8.2e-05	0.01	17.6	0.9	1	23	520	542	520	542	0.97
10	13	2.7e-06	0.00034	22.3	2.0	1	23	548	570	548	570	0.99
11	13	2.1e-05	0.0026	19.5	0.4	1	23	576	598	576	598	0.98
12	13	0.00058	0.073	14.9	2.4	3	23	610	630	608	630	0.94
13	13	1.3e-05	0.0016	20.2	0.4	1	23	636	659	636	659	0.98

Sequence Information

Coding Sequence: ATGGAAGTCATAAAAGTGTGTCGTATTTGTTCAATAACAGACGTGAAATTACACGACCTGCGATCATACCCATTAGAATCTTATTATGAGTCTGTAATAGGAACCAATCCCCAGTACACCAACTTGCCACCATTTGCCTGCTATGAGTGTGCAGCACTTGTgagaaaattttatttcttCAGACAGAAATGTCTACGGAGCCAGGCAGTACTCTATGGCGCTACAGATGCCTTTGGCAAGGTAAAACCTAAAGATGTAAAATTAATAGACAGGGAAGGTCTCCACATCGCCTCTAACCTCAAAATAACAATTTTGCCGAACATAGAGATATTAAAGAATCAAATAAACAAAGACATAAAACTTGAACCAGGCAGTGAGGATGAGGACGATAAGTTCAAAATTGAAGATCATAATTATGCTTCGTTTAACTCAATGGATACCTGTATCTCCAGCGATGATGATGAACCCCTGTCTCTTCATAAGGAGAAGAAAAGTCAAAATAAGGATACAGATGATGAGAAGGTGGACTTGAAAGAGGAGTTTGAAGGTCTCGAAtTCGCTGTTGGCACAGAAGACTCTGGACATTCAATTGAAGTCCCTAAAGTGGTTGCGAGGAAGAAGAAACGTGGGCTGAAAAAAGACACTTTTAAGCATAAAAAAGAGTTGTTAAATCCAAGCTTGGCTAGTGATGGCAAATGGAATGATTTTGCACAATACATCAATGTTATTACTTTGACGTTAGAAGAGCAGAAAGAAGAGATACAGAAACGGAAAGAGTCGACCAACTACTTGAACTCTCCGTTCCAGTGTAATCTGTGCTATAAAGGGTTCATTGACAATGATGCCTGGAATCATCATGTTAGCAAACATGCTGTGaGCGCAGGTAGCATAGAGTGTGAAGTCTGTAAGTTTAGGTTTAAAACGAAGCGCGCCTATCAGAAACATGCGTCCAACCATGAGAAGAAATACGCCTGTAAATCCTGTCCATACATATCTACTAACACGACTCAAGCTAAGCAGCATCAAGGATGGCATAAAGGAATTACTTTCAAGTGCAAATTTTGCGATGAAATCTTTACAATATGGACTTCTTACATGAGTCACGTGCGTATCAAACATCCATCCGAGTTCATATGTGGCTTCTGTGGGTACTCATTTATCAGCAAGTTGGGCCTCGCCATGCACAAGACTATGATGCACAAGGATGTCCAAGAGAAAGCGGAAGAAGGTCCATACTGCGAGGAGTGTGACGTCAAGTTCATATCGACGGAGGCGTACAAGAGACACATGGTGATGTCTACCAAGCACACCCAGAGTACAGACTCTATTAAAGGCTGTAGGACCTGTGGCGCGACGTTCGAGAACTCCGAAGAGTTACGACTGCATCATCGTAAGGAACACACGCGGAAGAGACCCAAGAACTATGGGAAGAAACGTTCTAACCTCAGTTGGCCTGCCAAATGCGAACATTGCACAGAAGAGATCCCGAACGCTCGCGAGTACTGGACACATTTCCGTCGAGCTCATCCCGACAAGAAGTACCCCATACAGAAGAACCACATATGTGATATATGCGGCAAGGGTTTCAGGGGTAACGCCTTCCTAATATATCACAAACGCACGCACTTCGAAGAGCGAGCGTACAAATGTTCACAGTGCGACAAAGCATTCTTCAACCGAACGAACTTAAATGTTCATGAGAAAACGCACTCAGACAACAGGCCTTACCCTTGTTCTGTTTGCTTCAAAGCTTTCAAGGGTAAAGGAGCGCTCAACAGGCATTTTAGAGTTCATGAGGAAATGTACTCAGACATCAGGCCACACCTATGCTCTGTCTGTGACAAAACTTTCAAGTTTAAAGGAGCGCTAGATAGACACTTTTTAAGCCACACGGGTCAAAAGCCCTACGAATGCGAAGTATGCGGCAAAGGGTTCTCTCAGTCAAATAGCAGGAAACTTCACGTGCGTACGGTACATCTGAAGCAACCCGCACCTTACGTCAGTCGCAACCGTCTTGAGAGACGGAAGCAAGGGCCGAAAGAATCGGTGCCACAGCAATTTATATACTGA
Protein Sequence: MEVIKVCRICSITDVKLHDLRSYPLESYYESVIGTNPQYTNLPPFACYECAALVRKFYFFRQKCLRSQAVLYGATDAFGKVKPKDVKLIDREGLHIASNLKITILPNIEILKNQINKDIKLEPGSEDEDDKFKIEDHNYASFNSMDTCISSDDDEPLSLHKEKKSQNKDTDDEKVDLKEEFEGLEFAVGTEDSGHSIEVPKVVARKKKRGLKKDTFKHKKELLNPSLASDGKWNDFAQYINVITLTLEEQKEEIQKRKESTNYLNSPFQCNLCYKGFIDNDAWNHHVSKHAVSAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKFCDEIFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDVQEKAEEGPYCEECDVKFISTEAYKRHMVMSTKHTQSTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNLSWPAKCEHCTEEIPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLIYHKRTHFEERAYKCSQCDKAFFNRTNLNVHEKTHSDNRPYPCSVCFKAFKGKGALNRHFRVHEEMYSDIRPHLCSVCDKTFKFKGALDRHFLSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQGPKESVPQQFIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121701;
90% Identity: iTF_01441315;
80% Identity: -