Alyc025635.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- Zfy1
- Assembly
- GCA_963680765.1
- Location
- OY796862.1:25235178-25247573[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 19 7.3 0.9 2 23 245 266 244 266 0.96 2 14 0.16 20 7.3 0.3 6 23 278 296 278 296 0.95 3 14 7.7 9.6e+02 2.0 0.1 3 23 308 329 307 329 0.91 4 14 8.2e-08 1e-05 27.1 1.0 2 23 352 373 352 373 0.97 5 14 1.7e-05 0.0022 19.7 2.6 1 23 379 402 379 402 0.96 6 14 0.0047 0.59 12.1 0.0 1 23 408 430 408 430 0.97 7 14 1.5e-06 0.00019 23.1 2.0 1 23 436 458 436 458 0.98 8 14 0.42 53 5.9 3.5 1 23 587 609 587 609 0.95 9 14 0.00041 0.051 15.4 2.0 2 23 616 638 615 638 0.92 10 14 4.3e-06 0.00054 21.7 1.5 1 23 644 666 644 666 0.98 11 14 6.7e-07 8.3e-05 24.2 5.3 1 23 672 694 672 694 0.98 12 14 0.00012 0.015 17.1 0.2 1 23 700 722 700 722 0.98 13 14 0.00029 0.036 15.9 2.2 1 23 728 750 728 750 0.93 14 14 0.00095 0.12 14.3 1.7 1 23 756 779 756 779 0.93
Sequence Information
- Coding Sequence
- ATGAATATTGAAACcgaacaaatatttttacaaaattctGCCCCGAGTCAGTCTTCGGCCCCCTCGCAGATTATGGGCACCCTGTCACCGTCACTCAACTGCCAGACTAACCTAGAGAATGTCCGAGACTTTTCGAATGTGTGTCGGACATGCGCCACCATCACAGAGTTTGTGATGCCCATATACTCAGGAGAGGGGCTGCAGAACAAATTAGCTGATAAAATAAAGAAGCACTTACCAATACAGGTGCGGGAGAGTGATGTGCTACCGCTGGTGGTGTGCTACCAGTGTGCGAGCACACTGCTGGCATGGCATGAACTGGTGAAGTGCTCCACTCAGGCCGACGCAGCTCTGCGTGCGAAAATCTGCCCCAATCAACAGaATCTACCTAACGGTACCATTAAATCAAGTTCAAGTGTAGAAGATGAAGCACAGAGCAAGTTGTTTTACACGAGTGTCAGAAATGCTCTCATTGACTTTCATATTGATCTGGATGAAGATGATGCTGATGTAGAGTTTGTTTGCCAAAAGTGTGTGGAGAAGCCAGCGCTGACCACTGTGCACAGCCTCGCTGAACATATCCGACACGACCACTCTCCTGACACACTCAACAACACTGTTAAATCATTCATCACCAACTACATAACTTTCGAACAAATGCTAGCAGAGGATTCTGACAGAGAAACACAATCTGACTCTAGAGAGAAGTCCCTGATAGTTCTGCCGAGCCTGCACTGTCCGTTCTGCGCGAGTGTGTTCTCTTCGGCCACGCGGCTCGTGTACCATCTCAACAAACACGTGGAGGTGAGCATGACGGCCGGCGCCATGTGCTGCGACCTCGTCTACAGCGACAAGAAACACTTCGTGCAGCACTTGCAAGAGGCACACGTCGACAGGACAGCCGACGAGCCAGTGCCAGTGTGCGTCAGCTGTGGCTTCACCGCAGACCGTGTCGAAGAAATGAGACAGCATTATAAAGACGCGCACAACGATGTGAAAAGTGCGAAAGAGAAGAAAATTGAGAGTCCAAACAACCAGAAGTACATCCCAGCGGTGTGCCCCGAGTGCAACAAGACGTTCTCCAATAAGTACAACATGTTCGCGCACATGCGCAGTCACACGCACACCGCGGTCTACCCGTGCGACAAGTGCACCCGGACCTACCGCAACCAGGGAAACCTTACTCATCACAAGAGACTTGCGCACCAAGGAATACTCAACTTCATATGCGTCGAGTGCGGGGAGGCGTTCCCGAGCCGGTCGGAGCGCGACATACACGCGCGCATACACTCGGGAGAGACGCCCTACAAGTGCCCGCACTGCGGCAAATCGTACCGCGCCAAGAACACGCTCACACGACACCTCGAGATACACGCAGACATACGCAAATACAAGTGCGAGACCTGCTCCAAAAAGAGCCCCTGCGACTTGCCCGAGGATCTCCGCAGTGCCCTGACTGCTTCTGACCTATCCGAGCTGTCCGATGACGAGCCGCTGGCCACGTTCGCTACCAAAAAGCCCGCGAAACTCTATACCAACTTCTACAGAGCACTCGTGAACTTTAGAGACCATTTTGTTAATGATCAACATCGTGAGGATTATCCTGACTTCACCGACTCGAGTGTGTCTGAAGCTGAAGAGAATGACGTGGACAGGTTCGACGACCTGACGCAGTGCAACATGAGGCGAGACAGACTGGACGAGGAGACGAGGCTAGAGCTGAGAGAAGTGCAGAACAAAATCGACAACAAGACATACTACACGTGTAAGATCTGCAGCAAGAACCTGAGCTCCGCTCACACGTACCTGTTCCACAAGCGCATCCACACGGGTGAGCGGCCCTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGACTGCAGCGGCACCTCACGGAGACGCACGAGCGCGTGCGCCGGTACAACTGCTCGCTCTGTACTAAGAACTTTGCCAACTCACAGAACCTCAAGCAACACTTACGGATACACACCGGGGAGAAGCCTTTCGTGTGTTCTCACTGCGGGAAGAGGTTCACTCAGAGCAGTTCGTTACACGTGCATCTGAAGACACACAGTGAAGAGTTTCCTTACGAGTGCGCGGAGTGCGGGGCTAAGTTCAGACTGCGGTCGGGGCTAGTGCGGCACAGACTGAAGCACACGGGGGAGCGGCCGCACGTGTGCGCGACGTGCGGCAAGGGGTTCCGGCAGCGGCACGAGCTCACGACGCACAGCCTCGCGCACAGCGGCGCCGCGCCGCACGCCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCGCTGCGGCACCACGTGCGGCGCGTGCACGACGCGGAGCCTCCCGACATCGTCTACGACGTCACGCACTACTAG
- Protein Sequence
- MNIETEQIFLQNSAPSQSSAPSQIMGTLSPSLNCQTNLENVRDFSNVCRTCATITEFVMPIYSGEGLQNKLADKIKKHLPIQVRESDVLPLVVCYQCASTLLAWHELVKCSTQADAALRAKICPNQQNLPNGTIKSSSSVEDEAQSKLFYTSVRNALIDFHIDLDEDDADVEFVCQKCVEKPALTTVHSLAEHIRHDHSPDTLNNTVKSFITNYITFEQMLAEDSDRETQSDSREKSLIVLPSLHCPFCASVFSSATRLVYHLNKHVEVSMTAGAMCCDLVYSDKKHFVQHLQEAHVDRTADEPVPVCVSCGFTADRVEEMRQHYKDAHNDVKSAKEKKIESPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTHTAVYPCDKCTRTYRNQGNLTHHKRLAHQGILNFICVECGEAFPSRSERDIHARIHSGETPYKCPHCGKSYRAKNTLTRHLEIHADIRKYKCETCSKKSPCDLPEDLRSALTASDLSELSDDEPLATFATKKPAKLYTNFYRALVNFRDHFVNDQHREDYPDFTDSSVSEAEENDVDRFDDLTQCNMRRDRLDEETRLELREVQNKIDNKTYYTCKICSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSSSLHVHLKTHSEEFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTTHSLAHSGAAPHACAACPRAFRQRRALRHHVRRVHDAEPPDIVYDVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_00123588;
- 80% Identity
- -