Basic Information

Insect: Agrochola lychnidis
Gene Symbol: -
Assembly: GCA_963680765.1
Location: OY796853.1:4994316-5004616[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 0.00019 23.0 2.4 1 23 126 148 126 148 0.97

2 12 0.00072 0.09 14.7 2.3 1 23 169 191 169 191 0.96

3 12 0.019 2.4 10.2 0.1 1 20 214 233 214 236 0.88

4 12 2.5 3.2e+02 3.5 1.1 5 23 244 263 241 263 0.93

5 12 0.0055 0.69 11.9 6.2 1 23 354 376 354 376 0.99

6 12 5.4e-06 0.00067 21.3 2.7 1 23 382 404 382 404 0.98

7 12 0.0021 0.26 13.2 1.1 1 23 411 433 411 433 0.94

8 12 3.5e-06 0.00044 21.9 4.5 1 23 439 461 439 461 0.98

9 12 2.5e-05 0.0032 19.2 0.4 1 23 467 489 467 489 0.98

10 12 2.5e-06 0.00031 22.4 1.4 1 23 495 517 495 517 0.98

11 12 3.3e-05 0.0042 18.9 4.1 1 23 523 545 523 545 0.97

12 12 9.7e-06 0.0012 20.5 1.0 1 23 552 575 552 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	0.00019	23.0	2.4	1	23	126	148	126	148	0.97
2	12	0.00072	0.09	14.7	2.3	1	23	169	191	169	191	0.96
3	12	0.019	2.4	10.2	0.1	1	20	214	233	214	236	0.88
4	12	2.5	3.2e+02	3.5	1.1	5	23	244	263	241	263	0.93
5	12	0.0055	0.69	11.9	6.2	1	23	354	376	354	376	0.99
6	12	5.4e-06	0.00067	21.3	2.7	1	23	382	404	382	404	0.98
7	12	0.0021	0.26	13.2	1.1	1	23	411	433	411	433	0.94
8	12	3.5e-06	0.00044	21.9	4.5	1	23	439	461	439	461	0.98
9	12	2.5e-05	0.0032	19.2	0.4	1	23	467	489	467	489	0.98
10	12	2.5e-06	0.00031	22.4	1.4	1	23	495	517	495	517	0.98
11	12	3.3e-05	0.0042	18.9	4.1	1	23	523	545	523	545	0.97
12	12	9.7e-06	0.0012	20.5	1.0	1	23	552	575	552	575	0.97

Sequence Information

Coding Sequence: ATGTGGTTGGAGGATGACCAGAGGAATGAAGAGCTGTTGGAACAAGATATAGATGCCTCCAATTGTTATGAAGTTGCTATAGTGTTAGCTCAATCCAAAGGTGCAAAAATATCATTAAGAGCACTTTACGATAAACTCATGACGCAAATTCTGGGGCTAGATTCATTGGGTGTAACTCAAGAGAAGTATGCAGCATTTCTGTTTCCATTAGTAAAGTCGGCCTTACTCAAGGTCGTACTAAACATCGAAATAATGGTACCTAAAGCTATCGGTAAAGACGCTATTCCAATCGATTACACGAGTACGCATCGGCACAAGGCCGCAGGCGAACAGGGGGGACCGGAATTGCTGGTAAAGCTAGAAAAACTGAATGTACACAAATGTGAGAAATGCCCAAAAGTCTTCCCAAATACGAGTGACCTCACAAAACATATGACTTATCatgatgaatacttctttacACATctCACTAGTGCATATGTATCTGTAGAAAGGGCCAGATTATTCAAATGTGACAAATGCAGCAAAAGATTCGATAATAACAGAGATTTTATGCTTCATAAGCTTGCACACATACAGGAGAATGTGAGAATTGAAAGAAAAGTCAGCAAATTCCAGAACCATGATATTGTGAAACCCTACAAGTGTCCGGATTGCGATGTTAGTTATGTTGCACAAACTACTCTTGATGAACATTCTGTTCTTCACGAGCCATTCCCTCACATCTGTGAGTGTGGCATTGGATATTATACGAAACAGGATTTGAAATGTCACATCAAATTGGTACATGGAACGAAAATGAAAGTAGAGTCGCAAAATTTAGATCCAGAAGAGGACCAAGTTATACCCCAAACAAAGCCTCAAGATAAATCCCAAAGAAAGTCTAAATCTAAATCCAAGAAGgggacaaaaataaaagaaaccataaagaaagaaaatcctAAAAAGAAGAAGTGGAAAGTTGCGCTGAAAGATAAAGATACtaacagcaataaaaaaaaaccagaatgGAATATTCCAGACCCAGATATAGAAATCAGAAAGACCTCCGATAATAAGTATGAATGTCCTGAATGTAAGAAATTATTTAGTTGCAAAAACCATCTTTTTACACATTACCGGGTTCACTCTGGTGAGCGCCCCTACACTTGCCATTTATGTCCGAAGGCGTTCAGTCAGTACACTACACTAAAAACACATATCGAGAGGCACATGGCCACAGAGAGGATCTATGTGTGCAAACATTGCCCTAAAGCTTTTACCCTGCCATACTATAGGGATCGTCATGAAGAAATACACAGTGCGATTAAAGCTCATGAATGTCCGTATTGTCACAAGGGATTCCACGATCCGTCCGCATTGATACGCCACAAACGAACACACACGGGAGAAAAACGATACAGCTGCACTTACTGCCCTAAAACATTCAGTGACGTCAGTGGCCTCATAGGCCATAAATTACGTCATGAGAACAAAAAAGAGTTTGAGTGTGAAATTTGCTATAAGAGATTTTATAATCGAACTGATCTTAAGAATCACATGCTGGTACACACTCATGAACGAAGCTTTGCTTGTGACTATtgcaaaaattgtttcactCGTAAAAGTAATTTAATGCTACATGTACAGAAGCATATGATTTTAAAGAAACATTTCGTTTGTGAGGAATGTAACAGGAAGTTTCTTACAAAGGATTATCTACAAAGACATATGAAGGttgtgcacaaaaaaaaaatacattcagaCGCTTACTCAAATTGA
Protein Sequence: MWLEDDQRNEELLEQDIDASNCYEVAIVLAQSKGAKISLRALYDKLMTQILGLDSLGVTQEKYAAFLFPLVKSALLKVVLNIEIMVPKAIGKDAIPIDYTSTHRHKAAGEQGGPELLVKLEKLNVHKCEKCPKVFPNTSDLTKHMTYHDEYFFTHLTSAYVSVERARLFKCDKCSKRFDNNRDFMLHKLAHIQENVRIERKVSKFQNHDIVKPYKCPDCDVSYVAQTTLDEHSVLHEPFPHICECGIGYYTKQDLKCHIKLVHGTKMKVESQNLDPEEDQVIPQTKPQDKSQRKSKSKSKKGTKIKETIKKENPKKKKWKVALKDKDTNSNKKKPEWNIPDPDIEIRKTSDNKYECPECKKLFSCKNHLFTHYRVHSGERPYTCHLCPKAFSQYTTLKTHIERHMATERIYVCKHCPKAFTLPYYRDRHEEIHSAIKAHECPYCHKGFHDPSALIRHKRTHTGEKRYSCTYCPKTFSDVSGLIGHKLRHENKKEFECEICYKRFYNRTDLKNHMLVHTHERSFACDYCKNCFTRKSNLMLHVQKHMILKKHFVCEECNRKFLTKDYLQRHMKVVHKKKIHSDAYSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -