Alyc042239.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8691216-8695924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0021 0.26 13.2 1.1 1 23 5 27 5 27 0.93 2 20 8.1 1e+03 1.9 0.1 3 23 57 78 57 78 0.91 3 20 0.016 2.1 10.4 0.7 1 23 100 122 100 122 0.98 4 20 0.0016 0.2 13.5 0.2 1 23 126 148 126 148 0.95 5 20 0.00086 0.11 14.4 0.2 1 23 153 176 153 176 0.95 6 20 0.0017 0.21 13.5 2.5 1 23 182 205 182 205 0.93 7 20 0.081 10 8.2 0.2 1 11 212 222 212 226 0.90 8 20 0.32 40 6.3 2.1 1 23 341 364 341 364 0.94 9 20 0.23 29 6.8 0.1 2 23 389 411 388 411 0.94 10 20 0.26 33 6.6 0.1 1 23 435 457 435 457 0.93 11 20 0.00013 0.017 17.0 0.2 1 23 461 483 461 483 0.98 12 20 0.00014 0.017 16.9 0.5 1 23 488 511 488 511 0.96 13 20 0.01 1.3 11.1 0.4 2 23 518 540 518 540 0.93 14 20 0.096 12 8.0 6.5 1 23 547 570 547 570 0.96 15 20 7.5e-05 0.0094 17.7 4.7 2 23 577 598 576 598 0.96 16 20 0.00019 0.024 16.5 1.7 1 23 604 626 604 626 0.98 17 20 0.07 8.7 8.4 0.1 1 23 773 796 773 796 0.90 18 20 0.0043 0.53 12.2 1.1 2 23 822 843 821 843 0.96 19 20 3.3e-05 0.0041 18.9 2.5 1 23 866 888 866 888 0.97 20 20 0.14 18 7.4 0.5 3 23 893 914 892 914 0.95
Sequence Information
- Coding Sequence
- ATGAAAAATCTATACATTTGcttttattgccatcaacagttCTCTGACCCAGCAACATTGAGGCTACATAACATAGAACACGGTTTTTTGACGACTTCGCAAGTCAAATACGCTTTGTCGAAACTGAAGAAGTACGAATTAGTCAAAGTAGATATTACTGATGTCGGCTGCAAGCTCTGCGATGAATTGATCCCAGATTTTCCGTCCTTAAAATGGCATCTGTTAGAAAAGCATAAGAAGAATTTAGATCCAAAATCCGGCGATGGTGTTCTTCCGTTCAAAGTTACAGTCAATGACTTCTCATGCGCCCTGTGCTTAGAAAAATACACTGAATTCAAGTCTCTGAACCAGCATATGAACGTACATTTCCAAAATTTCATTTGCGAGCAATGTGGCACTGGTTTCATAACACCAGAACGTTTGAGAACTCACGCGTTCTCACACGAAACAGGATCATTTCCTTGCGATATTTGCGACAAAGTATTTAGGTCTACTAACGCTAAAAACGAACATTACGCTACCGTACATATGAAAGTAAAAAGACATAGGTGTCCACATTGTCCTGAAGCATTTAGAAACTACTTTCagagaaataaacatatttctGCCATCCACGGTTTGAAATTAAAAGAATTCAAGTGCACTATGTGCCCTAAAGTTTTCACTATTAGCGGATTGGACTCCGAAATACCTGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTTTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAGTAGATTCCGACAAAAGAGTATTAAAGCCTTCTCTTCACCACCAACAAGAGATTTCTCTCCGTCACGCAGTCCTTCTCCTGTTTATCTAGGGACTGCACCATCGCCTTTTATTGATAGTACGCCGACTATATCCGTCCAAACTGTGAAACCAAAAGTGAAGAAAACTCCAGATATCAGGCAGAATGCTCTGGCTGTGTTTGAATTTTCAACGGTCTACCCGTTTGTTTATGGCAGCAATAAGTTCAAATGTTTTGTTTGCTCGCAACCGTTTCTGGACTTAAATGAATTGAAGCTGCACATGCACTTTTCCCACGCCTTCGCTCCTCTTAAGAGACTTGTTAATAATCGTAGAGAAAATGTCTTAAAAGTAGATGTAAGTGATATAACTTGCAAAATATGCTCAGAAAAACCTCCTAACCTTGTCGAATTGAAGCGTCACCTCAAAGAAGTACACGAAAAACCAATGGATTTAGAAATTCAAGACAATATGATCCCGTTCAATCTTGAACTGGTAGACGATGCTTACAAATGCGTTGTATGCGAACAGAGTTTCATAAAAGTGCGAATTTTAGTTATACATATGAGTGAACACTTCAATAATTATAGCTGCGAGATTTGTGGATCAGTCTTCATGACTTTACGGCTCTTGAAGAAACACTTagaagtacatgattctggaaaCTTTCCTTGCGATCGATGCAATAAAGTTTTTAGTACGCCTTATAAACGGACTTTGCATATTCGAGGCGTGCATCTAAAGCAGTGTCCCAGAAGATGTCCAATGTGTCCAGAAAAGTTTAATTCAAATTACAAAAGGACCATTCATTTACAAGATGTGCATAATCAGGAGACTAGAGTGCATAAATGCAAGACTTGCGGTCGAGGATTCAATCTGAAGTATCATTTGGTCTGTCACGTGCGTTCTGTCCATCTCCAGGAGAGGAATCAGCAGTGCGATGTGTGTCACCAAAGGTTTTGTAATAAGGAGTCTTTGAAGCGTCACATGGTTATACATACTGGAGAGAAGAATCATAAGTGTGATGTTTGTGGGATGGCGTTTTTGAGAAGGAAGAATCTGAAGGACCATTTACGTTTGCATGATATTAgTATCATCCAGAAATCAAACTCCACGATCACTCTGAAAGACGAAGATGGAACAGAAATTAAACTTACAGTTCTCAAATATCCAATTTCTTTAGATGCTCTACAATATGAAACTCAAGATATTACCGAAAAACATAACTttgaaaaaaaacgaaaaaagaaaattagcaAAACGAAAGAAGTTAAGAAAAACAACGTCAAGGTAGAAAACATATCTTTGTTGAAAGAACCAGTCTCTATAAATAATGTCGACTGGAAAAACCATAACGAGCAAGAAAATTCGGTGACGTTCAATGTGAAAACTGTACAAGGATATATCCGTGCACCAACGAGACAACGAAGTGAAAACGTTGACTATGAAACCTGGAAACAGAATGCCTTGATCATCTTTGAAAACTCTTATGTCTATCCATTTGTACATGCGGGTAACAAATACAAATGCGTCATCTGCTCCAAGCCCTTCCTAGACGCTAATCTATTGAAAGACCATAGTATAAACGAACATACAATCAAAGAAATGAAACGTGCATTAAATAATAGAGTTAGAGACAAGAATCTTAAAGTCGACGTCACATACCTCCAGTGCAAGATCTGTTTGCAATCTCTACCTGATCTGCATAACTTGAAAACACATTTAAAGGAGCATGGTAAGAAAATACAGCCGGATTTGCAAGATAATATAATACCTTATAAGCTAGGAGGGGAGAAGAATTTCAAATGTGAGGTTTGTGGGAAGGCGTATGCGAGGAGTAAGAACCTTCGAGACCACTGCCGGTCCCATGAAGTCGGATTGTGTGCTATTTGTGGTCTTAACTGTGGGGATCATAACAATCTTGTTGCTCATGTTAATAACGTGCACTGA
- Protein Sequence
- MKNLYICFYCHQQFSDPATLRLHNIEHGFLTTSQVKYALSKLKKYELVKVDITDVGCKLCDELIPDFPSLKWHLLEKHKKNLDPKSGDGVLPFKVTVNDFSCALCLEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCDICDKVFRSTNAKNEHYATVHMKVKRHRCPHCPEAFRNYFQRNKHISAIHGLKLKEFKCTMCPKVFTISGLDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFSRFRQKSIKAFSSPPTRDFSPSRSPSPVYLGTAPSPFIDSTPTISVQTVKPKVKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDLNELKLHMHFSHAFAPLKRLVNNRRENVLKVDVSDITCKICSEKPPNLVELKRHLKEVHEKPMDLEIQDNMIPFNLELVDDAYKCVVCEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISIIQKSNSTITLKDEDGTEIKLTVLKYPISLDALQYETQDITEKHNFEKKRKKKISKTKEVKKNNVKVENISLLKEPVSINNVDWKNHNEQENSVTFNVKTVQGYIRAPTRQRSENVDYETWKQNALIIFENSYVYPFVHAGNKYKCVICSKPFLDANLLKDHSINEHTIKEMKRALNNRVRDKNLKVDVTYLQCKICLQSLPDLHNLKTHLKEHGKKIQPDLQDNIIPYKLGGEKNFKCEVCGKAYARSKNLRDHCRSHEVGLCAICGLNCGDHNNLVAHVNNVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00147864;
- 90% Identity
- iTF_01095159;
- 80% Identity
- -