Alyc027894.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola lychnidis
Gene Symbol
-
Assembly
GCA_963680765.1
Location
OY796864.1:19959702-19976189[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.5e-08 1.1e-05 26.4 0.0 3 37 311 345 309 350 0.90

Sequence Information

Coding Sequence
ATGGCCCCCGGCGGTACGATTGAAGTGAACACTTATATAGAAACATCGACTGCTAATAATGTAGACCAAATCTGGGTATCAGCCTTCCAGATTCATCCTATAAATGACCCATTTTTAGGACAGACTGGTATTTGGTCTGGGCAACATAACTTTGTGCCTGGATGGCATACTCTGAAGATAATCTTATCCGCCGAAGCAACTATTGGTGAAGGCTACATTACCTTCCTTGGCAGGACATTTcaaaattctattgttttagTCGACTCATTTCGTTACATACCTCCTGGTATGGAAGAAAGTGCTTGCCGAATCTACGAAGACAAACCGAAACCAGTGCCAACCACACTAGAGCCGACAACCATTGACCTAACCACGCCGGCGGAGACAACGCCTGACCCAACAACGCCAGAGATGACAACGCCTGAACCAACCACGCCAGAGGTTACAACTCCTGAGCCAACTACGCCAGAGATAACAACGCCTGACCTAACCACGCCAGAAGAGACAACGCCTGACCCAACCACGCCAGAAGCGACTACGCCTGATCCAACCACGCCAGAGGTGCCAACGCCTGATCCAACCACGCCAGAGTTGATAACGCCTGAGCCAACCACGCCAGAGGTGACAACGTCTGACTCAACCACGCCAGAGGAGACAACGCCTGACTCAACCACGCCAGAGGAGACAACGCCTTATCCAACCACGCCAGAGGAGACAACGCTTGACCCAACCACGCCAGAGGAGACAACGCCTAATCCTGCCACGCCAGAGGAGACAACGCCTGACCCAACCACGCCAGAGGTGACAACGCCTGAAAATATCAATCGATTTCTCTTAACTGTTGAAACGTGGATCAAAACTCAATTAAGTACAGaaatagatagaaaagacaAGATGCCCAAAATTAAAAACACAGAAGCTTACAGTTCTGAGAGCTTACAAAAAGCTTTGCATGAAGTTCAAAATGGTGGAAAAATTCGTGAAATTGCGCGGAAGTACGGAATTCCGAAATCTActcttcattttaaaataaaacatcccGAACATAAGTCTACCTTTGGGCCATCACCTTACTTAAATAACCAAGAAGAAACTCGTATCGAAAACTGGATTATAGAGCTATCCAAAAAAGGATTTCCTCTTAAGAAAGAAGATCTTCAATCCAGTGTACAAAGATTTTTGGTGGATCATCCAAGGCCAAATCCATTTAAAGATAATTATCCAGGAGAAGGTTGGGTAAGAGGATTCTTAAAACGACATCCCGGTATTGGCAAAAGGACAAGCGAGGGTGTAACATTCTCGAGTGCCTGCGTTTCTGAAACAGATATACGCAAATGGTTTGCTGAAATTCACCAATATTTCACTGAAAAGGACTTGCTGGAGGTATTGGACGATCCAAAGCGTGTGTTTAATGGGGACGAGAGTGGATTCCAGTTGTGTCCAAAAACTGGAAAAGTTTTGGCACTAAAAGGTATGAAAAATGTTTATAATGTCGAGACAAGCTCTTCAAAAGATTCTatgactgtaatgtttactttcTCAGCTGCTGGTGCTTATTGTCCTCCGATGGTAGTCTATAATTATCAGAGGATTCCTCAGAAAGTGATAGAGGGTATACCGTCTGAGTGGGGGGTAGGGAGGAGTGAAAACGGATGGATGACATCCGAATTATTCTTTGAATATATGGCAAATGTTTTCCATCCTTACCTAATAAGGGAACATATACCTTTGCCCATAATATACTTTCTGGATGGTCATAAAACCCATTTGACGTATGAAGTGAGCAAGCTATGCACAGAATTGCAAATAGAACTGATAGCTTTATATCCAAATGCCACTCGTATCCTCCAACCGGCAGACGTAGCAGTGTTTCGCCCAATAAAAGCTGCCTGGAAGGCAGCTACAAGAGAATGGCTATCCCAAAATCCAGGACAAGTGATAACAAAAGTTAATTTCGCAAAAGTCCTTAATGCAGCCCTACAAAACTCTATCAAAAATGAGACACTTATTAATGGCTTTAGGGCTTGTGGTCTGGCACCTTTTAATCCCGATGCCGTAGATTATTCAAAATGTATACCATCCAACAAGCAAGCTGACGTTGACATCATTCAGGTTCCAAATAATGATGATACTATAACATTTTCCCAATTTTTGTCGTTGATTGGCCCAAATAAAGCAGCAGAACTGCAGAGTATTGAAGATCTCGATCAGATTGAAGATAACTTACAAATTCTTCACAATGTATATAAAGCCTTTGGGTCATCAAAAACTACATCTGTTACAACAGCTATAAAAGAACAGCACCTAACTTCTGAAGATCCAAAATTCCAGTTTCATACATCAATGCTTCCAAATGAAAATTCAACTATTGAAGAATGTTTATTATCACAACAAGCAGACAAAGAAATGTTCAATCTAACGTCACAAAGACTGACTCCCATTCCAAATAATACACATGAAGATGATACAATTTCTTTACCATCTCCGACAATACTTCGGTACACAGACTATAACGATATTTTTCTCAGCCAAAACAACGACGTTCACACTGATTTTAGTCTGCTACCTTTGGAACAGACTAATATTTCTCAGGTTAGGCCAAAATCTCCCATCAAAATTCTCCAGGATATTGTATTAATGAAGCAGCCAGGTTCTGACTCAAGCTACACTTTATGTCCTGCTACAGGAATTATTACTAAGACTAGGTCCTCAAGTGGTCCAACTTCTATTGAAGTAACTGAAGCGATTACTGAACTTGAAAGAACGCCAATGAAACAATCGAATACACTTGACCAAGGAATAGATATTTTGCAACCTCTGCCACTATACTCGGAAATTAGTCCAGCGTTCAAACTCCGTAATAACGCAGACTTAGGTCCGTATCTGACGTTACCTAAAACACCGGAACGAAAAGGCAAACGTGAAATAAAAAGAATGCCTTTTGCTATTACGTCAGATAAATACAAGACCATGTACAAAAACCAAATCCATATAAAAGAATCACAAATACGTCAAAAAGAGGAGAGGAAAAAATCCAGAGCAGAAGCAAAAGCTAAGAAAGAATCCTGTAACAAAGAGAAGTTAAAAGAAGGAATAAAGGCAAAAAAGAAACCAGCAGGAAACAATACTAACGCGTGTAAAATATGTTCAAAGACGACGAAAACGATAGGTCGCGTTGTTTGTGATATGTGTTCATTAATTTTTCATGTCAAATGTGTACCACCCAAACACAAAAAGCATGTGCCCGAACACATAGATACAGATTTATATGTTTGTCATACATGTTATAAAGAGGAAAATGATGAAGATGAAGAAAATAACAgttataaagaaaataacaGTGATGCTGAATCGACCATGTCTGTTGAAGAAAACAGCGAAGAGGCACATCAACTGTATAAAATGTTATTAGATTCTAAGAaaacttattaa
Protein Sequence
MAPGGTIEVNTYIETSTANNVDQIWVSAFQIHPINDPFLGQTGIWSGQHNFVPGWHTLKIILSAEATIGEGYITFLGRTFQNSIVLVDSFRYIPPGMEESACRIYEDKPKPVPTTLEPTTIDLTTPAETTPDPTTPEMTTPEPTTPEVTTPEPTTPEITTPDLTTPEETTPDPTTPEATTPDPTTPEVPTPDPTTPELITPEPTTPEVTTSDSTTPEETTPDSTTPEETTPYPTTPEETTLDPTTPEETTPNPATPEETTPDPTTPEVTTPENINRFLLTVETWIKTQLSTEIDRKDKMPKIKNTEAYSSESLQKALHEVQNGGKIREIARKYGIPKSTLHFKIKHPEHKSTFGPSPYLNNQEETRIENWIIELSKKGFPLKKEDLQSSVQRFLVDHPRPNPFKDNYPGEGWVRGFLKRHPGIGKRTSEGVTFSSACVSETDIRKWFAEIHQYFTEKDLLEVLDDPKRVFNGDESGFQLCPKTGKVLALKGMKNVYNVETSSSKDSMTVMFTFSAAGAYCPPMVVYNYQRIPQKVIEGIPSEWGVGRSENGWMTSELFFEYMANVFHPYLIREHIPLPIIYFLDGHKTHLTYEVSKLCTELQIELIALYPNATRILQPADVAVFRPIKAAWKAATREWLSQNPGQVITKVNFAKVLNAALQNSIKNETLINGFRACGLAPFNPDAVDYSKCIPSNKQADVDIIQVPNNDDTITFSQFLSLIGPNKAAELQSIEDLDQIEDNLQILHNVYKAFGSSKTTSVTTAIKEQHLTSEDPKFQFHTSMLPNENSTIEECLLSQQADKEMFNLTSQRLTPIPNNTHEDDTISLPSPTILRYTDYNDIFLSQNNDVHTDFSLLPLEQTNISQVRPKSPIKILQDIVLMKQPGSDSSYTLCPATGIITKTRSSSGPTSIEVTEAITELERTPMKQSNTLDQGIDILQPLPLYSEISPAFKLRNNADLGPYLTLPKTPERKGKREIKRMPFAITSDKYKTMYKNQIHIKESQIRQKEERKKSRAEAKAKKESCNKEKLKEGIKAKKKPAGNNTNACKICSKTTKTIGRVVCDMCSLIFHVKCVPPKHKKHVPEHIDTDLYVCHTCYKEENDEDEENNSYKENNSDAESTMSVEENSEEAHQLYKMLLDSKKTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-