Alyc001724.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796847.1:26282767-26283899[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-10 1.6e-07 32.3 0.1 1 37 3 38 3 43 0.95 2 2 2.8e-09 1.2e-06 29.5 0.1 1 38 83 120 83 127 0.90
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGAAAACTTACGTGCAGCTATGGCAGCTGTTAGAAATGGACATTCACAGATAGCTGCCTCAAAACGTTATGGAATTCCTAGACGAACTCTCAGAAATCATCTGCTGACGGGGAGCTTAGTAAAGCATACAGGAAAACCTTCAACATTCGACGAAgtacaagaaaaaaaactcGTGAAAAGAATACTTAACCTTTCAAAAAATTGGATTAGATTGACTTCAGGAAGAGCAATGTGGACGGAAGAAAATTTGCGTGGGGCAATGGCGGCAGTTGTCCGGGATAACATGACACAGCGCGCTGCAGCACATCTTTATGGTATTCCTAGGCAAACACTAGCTGATCACCTGTCAAAGGGAAGCATCGTGAAACGAATGGGTCGACATTCTATTATGAACGAAGCTCATGAAGCTTTCCTCGTGAACAGGTTAATAAAACTTACTAATAGTGGGATGACAGTCACCCCACACGTTATTTGCAAGCAAGCGTTCCTATTTTgcgaaaagtttaaaataaagcaTAATTTTAATATCGAATCGAGGCTTGCGGGAAAGAAGTGGCTTAAGAGGTTTTTGAAACGGCACCCCGAGGTTTTGCATTGTTTATCTTGA
- Protein Sequence
- MWTEENLRAAMAAVRNGHSQIAASKRYGIPRRTLRNHLLTGSLVKHTGKPSTFDEVQEKKLVKRILNLSKNWIRLTSGRAMWTEENLRGAMAAVVRDNMTQRAAAHLYGIPRQTLADHLSKGSIVKRMGRHSIMNEAHEAFLVNRLIKLTNSGMTVTPHVICKQAFLFCEKFKIKHNFNIESRLAGKKWLKRFLKRHPEVLHCLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -