Basic Information

Insect: Agrochola lota
Gene Symbol: -
Assembly: GCA_947364205.1
Location: OX376242.1:5866911-5868518[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00021 0.016 16.1 0.4 2 23 275 295 274 295 0.97

2 8 0.0061 0.46 11.5 1.3 2 23 307 328 306 328 0.95

3 8 0.21 16 6.6 0.4 2 23 349 369 348 369 0.92

4 8 0.00014 0.011 16.6 5.1 1 23 376 398 376 398 0.95

5 8 0.033 2.5 9.2 1.7 1 23 404 426 404 426 0.98

6 8 4.7e-07 3.6e-05 24.4 1.2 1 23 432 454 432 454 0.99

7 8 1.9e-06 0.00014 22.5 1.2 1 23 460 483 460 483 0.97

8 8 5.5e-05 0.0042 17.9 1.3 1 23 489 512 489 512 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00021	0.016	16.1	0.4	2	23	275	295	274	295	0.97
2	8	0.0061	0.46	11.5	1.3	2	23	307	328	306	328	0.95
3	8	0.21	16	6.6	0.4	2	23	349	369	348	369	0.92
4	8	0.00014	0.011	16.6	5.1	1	23	376	398	376	398	0.95
5	8	0.033	2.5	9.2	1.7	1	23	404	426	404	426	0.98
6	8	4.7e-07	3.6e-05	24.4	1.2	1	23	432	454	432	454	0.99
7	8	1.9e-06	0.00014	22.5	1.2	1	23	460	483	460	483	0.97
8	8	5.5e-05	0.0042	17.9	1.3	1	23	489	512	489	512	0.95

Sequence Information

Coding Sequence: ATGCTCACTCGTACTAGAGCTCATGCTGGCGGTTCGTTATTATCTAATGAAACAAATAGGCAGAAATATTCGTCGGAAAAGTGCAGAATATGTTTGGACGACGGTGAAATACCTATATTCGGCGCTAAAGATATTTCCGATGCTGTGACGGAATTTGGAATGATCACAATTGGTAAAGGTGATAACCTACCCCAGTATTTGTGTGAAGCTTGCTATAAGTTACTGGAAGCGGCAATCTTATTCCGAAAAACAGCTAAACAATCTGATGAAGTACTCAGGAGAACGGATTATTCAGGTAATAGCACAGAAGAGTCAGATTGTAAACAAGAAGATGAAACATACATTAAAAGAGAATATCTTGAGTTTAATTATACTTCTGATTCAGAATCGAATTTAGATGAGTTTGATTGGCTGAAACGGGAATGTGTATCTGAAGATGAGACTACCAATTATAATCCTAACATTTCTGAAACTTATTCTCAAGAGAGTAATGATTGTAAAGAATTCCAAACAGATTTACTCCATGTAAAACGAGAGGAAGATGGATCCATCATTGAAGCAGACAGTGAAACAATAATGATAATTGTTTCTGACAAAAATAAAGTAAAACTGGAGCAAGACAGAGATGAAAATAGTCATATGGAATATGATACTGATGAAGAAACAACAGAGTATAAAGAACAAGCTCTTATGAAAATACTTCCCCATCAAATAGAATGTGCAGTCTGCCATAGCATTGTCTTAAAAAATGCATATAAAGTACATCTAAAAGAACACAGAGAAAAATACAAGGAGAAATTTAATAAAAAGTATGGTAAAATAGAATGTGAATTTTGTGGTAAGAGAATAAGCAAATCATATCTTAAAATTCACATGAGAATACATGGTACTGCTGAAGAACAAGCTGTGAGTCTTGTAAAATGCTCAATTTGTAACAAAATGTTCAACATGCGTTATTACAACGATCATGTTAGAAGAATGCATCAAACAAATAGTAAAAAACAAAATGTAAAAAGAAAAGAAACACCACCACCAAACTATAATAAATGTCCAGTTTGTGACAGAAAAGTGAAAGAAACTGAATTTAAAATACACCTAGAGAACCACAATGGTCCTCGTAAACAATATGTTTGTGACAAATGTGGCAAGGTATTCAAACATCTATCTGCCTTCAAAACCCATTGCCTTACGCATGGTAGTGAATTGAAATATAAATGTCAGTTTTGTCCATATAGAGGGTTGCATCAGGGACTACTCAAAATTCATGTGAGAACACACACTGGAGACTATAATTACAAATGTACTGAATGTCCAGCTCGATTTATAACAAAGAGTAACTTGTCTAAACATCTTCAGAGGCACAAAGGTTTTTGTACCTTTAAATGTGTGGATTGTGGTAAAGGTTTTTACACCAAACGGGATCTTGAAAAACATACTAAAAATGTCCATATGCCAGCTAAACATCATATTTGTGAGGTTTGCGGTAAAGCGTTTGGACACCGCGACAACATGTTGAGCCATCAGCTGAAAGTACACAAAAGAGAAAAGATATTGCCCAGGGGTCGCATGCCTTCATATCTAAAAGCAGAATTAATGCACCTTGAATGA
Protein Sequence: MLTRTRAHAGGSLLSNETNRQKYSSEKCRICLDDGEIPIFGAKDISDAVTEFGMITIGKGDNLPQYLCEACYKLLEAAILFRKTAKQSDEVLRRTDYSGNSTEESDCKQEDETYIKREYLEFNYTSDSESNLDEFDWLKRECVSEDETTNYNPNISETYSQESNDCKEFQTDLLHVKREEDGSIIEADSETIMIIVSDKNKVKLEQDRDENSHMEYDTDEETTEYKEQALMKILPHQIECAVCHSIVLKNAYKVHLKEHREKYKEKFNKKYGKIECEFCGKRISKSYLKIHMRIHGTAEEQAVSLVKCSICNKMFNMRYYNDHVRRMHQTNSKKQNVKRKETPPPNYNKCPVCDRKVKETEFKIHLENHNGPRKQYVCDKCGKVFKHLSAFKTHCLTHGSELKYKCQFCPYRGLHQGLLKIHVRTHTGDYNYKCTECPARFITKSNLSKHLQRHKGFCTFKCVDCGKGFYTKRDLEKHTKNVHMPAKHHICEVCGKAFGHRDNMLSHQLKVHKREKILPRGRMPSYLKAELMHLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121788;
90% Identity: iTF_00037214; iTF_00039213;
80% Identity: -