Alot019898.4
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376247.1:6841372-6847212[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.9 4.5e+02 2.1 4.0 2 23 65 86 64 87 0.92 2 22 3.7 2.8e+02 2.7 0.8 2 23 114 136 113 136 0.94 3 22 1.5 1.2e+02 3.9 6.7 1 23 161 183 161 183 0.95 4 22 0.34 26 6.0 2.0 1 21 187 207 187 210 0.94 5 22 0.74 56 4.9 0.2 1 21 215 235 215 236 0.94 6 22 2.1 1.6e+02 3.5 1.1 3 23 244 266 243 266 0.86 7 22 0.00085 0.064 14.2 2.7 1 23 273 296 273 296 0.96 8 22 0.22 17 6.6 1.5 1 14 301 314 301 332 0.94 9 22 1.3 1e+02 4.1 0.2 2 23 358 380 357 380 0.94 10 22 0.0019 0.14 13.1 0.6 2 23 404 425 403 425 0.95 11 22 0.18 14 6.8 0.1 2 23 490 512 489 512 0.94 12 22 0.14 10 7.3 0.2 2 23 536 558 535 558 0.96 13 22 6.3e-05 0.0047 17.8 0.5 2 23 582 603 581 603 0.97 14 22 0.1 7.8 7.6 0.5 1 21 607 627 607 628 0.91 15 22 0.64 48 5.1 0.1 1 23 669 692 669 692 0.95 16 22 0.57 44 5.3 0.0 2 23 718 740 717 740 0.95 17 22 0.0046 0.35 11.9 0.5 2 23 764 785 763 785 0.95 18 22 1.7e-05 0.0013 19.5 0.0 1 23 789 812 789 812 0.97 19 22 0.0055 0.42 11.6 0.6 1 23 816 839 816 839 0.98 20 22 2.7 2e+02 3.2 0.6 1 23 844 869 844 869 0.88 21 22 0.087 6.6 7.9 5.7 1 22 878 899 878 901 0.88 22 22 0.0052 0.4 11.7 0.2 1 23 911 934 911 934 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAAGGGCAGATACGGGCAAATGGGCGAATACCCCTAAGTGTCCGTTAAAAGAGAAAAGTGAGCCGACCAGTCACTGCGATATTTTCTTTTTGTTTCTAGAACCACATTTATGGGCGAAAGAGAACGCGGAGATTGTATTGCAATATTCGACCCTGTACCCATTCAGATTGCGAGGGAAAGCTATCACTTGCGTCTACTGCTGCGAAGGCTATGACGATCCCACGCATTTCAGAAGACACTTCGACGTCCACCACCAAGAGTTCACCATCGGCACGGCATTCCACCACATGAGTAGCTTAAAAGAATACCTGAAAGTCGATATATGTAACCTAAAATGCAGACTGTGTTTTCAACCTTGTGAGAGAATCGATGATGTCGCTCAGCACTTGAAAGAGTCACATTCAGATGTAGCAAAGAAATTAAACCTCGAATTCGATGTGGGTTTGCAACCTTACAAGTTGGTGAATAACAATTACTGCTGCTATCATTGCGGCAAAAAAATGCCCACTCTAATCAAGTTGTGTCGTCACACGATCTTGCATTACCAGCGGTTCACTTGCGACACTTGCGGCCGTAATTACCTCTCATATGAGGCTTTAAAGTACCATATTAAATGCATCCATGCAGTTACGAAACACGTGTGTAGAAAGTGCTGGACAGAATATCCCACACTGGAGCAGAAGAAGGCACATGTTAGGGAATCAAAACCATGCTGGACTTTCTGCTGCATAGTTTGTGGGGACAGATTCCAATCCTGGGAACAGAAGCAGAAACATCTACAAGCAGAACATGGATACGAAAAGATAGTCTATAACTGTCCTGATTGTGAAGAAAAATTCACCTCGAGAAAGTATTTTTATACACATTATAAGCTCTCACATACTGATGAAGGATTCCAATGCGCTTACTGTGGACTCAAGTTTAATACACAGAAAcgAGTCCAAAGTAACGATCCCAGTGGTCTACGTATGCATGTAGTTACAATTCACGCGAATTATGACGTCAAAGCAGCATTCTATAAGAAATTAGGGAAAGACTTCCTCAACGTTGATATAACAGATCTTCAATGTAAACTATGCTTCATGCCTATTGACTCCTTTGACAGTTTGATTTACCATTTAAAGAACGATCATCAACAACCGATAAACACTGACGCACAGATCGGCGTCCTACCTTTTAGACTAAACGATGGCTCAATATGGAAATGCACGATATGTCCGAACGAGTTCAAAGATTTTGTCTCCCTAAAGAAACATACTTCGGAACACTTCCAGAACTACGTTTGTGATACTTGTGGCGAAGGGTCCACAAAGGAAATTGACGGACTTAATCAGACCGAAAGTAAACCGAAACAAAGATTGTTTGAAAGGTCCGTTGGACAGAACCCGCAAAGGCAAAACGCTGTTCTAGTCCTTAAACATTCGACAGCATTCCCTTTTAAGACACGTTTTAATAGGATTGTCTGTTCGTACTGCCATGACGAGTTTGAGCCAATGGCGGCGTTGAGAGAACATATGAAAGCCGACCATTCCAGTGCTGACTACAACAGCGCTTTCTATAAAGTCTACGATGCCCTAAAAGTTGAAATTACTGATCTAAAATGTACCATGTGTTCCCAAGAACTTCCGAATATAGACAGTTTCATGAACCATATATCTAGAGACCACAAAATCAAAGTTAACTTTGATGTTCCTTTTGGAGTACTGCCTTACAGACAAGGACCTTCGGGAAGATGGACGTGTCTCGAATGTGATAAAACGTTTCCTAAATTCTCACAAATCAACGTCCATTTGAGGACACACATGAAGATTTTTACTTGCGAAAAGTGTGGAGCCACATTTTTGTCAGATCATGGTCTGAGACAACACGAGCGTAACTTTAAATGCTATAAGTCTTCCTACAACCCTCGCTTTGGAAAAGCCTTGAAATATAAAAGCAATACTGAGATTATTTTAGAATGTTCAACCGCCTGTCCTTTTAGGACTTGGGGCCAGAATTTCAACTGCGTCTTTTGTCGGGTTCAATCAAATGATCCGATTGGTCTGAGAGCTCACATGGCGTCTCGTCATGCTAATTTCGATATACAGCTAGTCTTCAGTAGGAAAATACGGAAGGAATTTTTGAAGGTTGACATAACAGATCTGCAATGTAAACTTTGTTTTATACCCATCGATACTTTAGATGAGTTGGTGATACATTTGAAGAATGATCATAAACAGCCTCTGAACGCTGATGTCCAACCAGGGGTACTTCCGTTCAAACTCAACGATGGTTCGAACTGGAAATGTGCTATATGCAAGATACAGTTCTCAGACTTTATTTCACTAAAGAAACATACATCAGAACACTATCAAAATTACGTTTGCGACACTTGTGGAGAGGGTTTCATTACAGAATCTGCATTGAAAGCCCATACGAAGATACCCCACGATAACAAATACACATGCAGTCGTTGCGTTGCTACATTCACTACTTTAGAAGAACGCAACATTCACATCAAAACTCAGCACACGACACTACCTTACATGTGCGTTTACTGCAAAGAAAAGCCTAGGTTCGCGACCTGGGAGCTCAGAAAGAGACATCTCATGGAGTTCCATAATTACAAACCTGGGGCCGAAATGTATGAATGTACAACTTGCCATATGACTTTCAAAACCCGTTCGCAGAAGTACCACCATAATGTAAAAGCTCATAGGACGAAGAAAGAGACAGAATATAGTTATCCCTGTGGTAGTTGTTCTAGAGCGTTTGCTTCTAAGTTGTCTTTGGATAAGCACATCGCGAAAAAGCATTTCCATGTATGA
- Protein Sequence
- MDSRADTGKWANTPKCPLKEKSEPTSHCDIFFLFLEPHLWAKENAEIVLQYSTLYPFRLRGKAITCVYCCEGYDDPTHFRRHFDVHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCFQPCERIDDVAQHLKESHSDVAKKLNLEFDVGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTILHYQRFTCDTCGRNYLSYEALKYHIKCIHAVTKHVCRKCWTEYPTLEQKKAHVRESKPCWTFCCIVCGDRFQSWEQKQKHLQAEHGYEKIVYNCPDCEEKFTSRKYFYTHYKLSHTDEGFQCAYCGLKFNTQKRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMPIDSFDSLIYHLKNDHQQPINTDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGSTKEIDGLNQTESKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALREHMKADHSSADYNSAFYKVYDALKVEITDLKCTMCSQELPNIDSFMNHISRDHKIKVNFDVPFGVLPYRQGPSGRWTCLECDKTFPKFSQINVHLRTHMKIFTCEKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFIPIDTLDELVIHLKNDHKQPLNADVQPGVLPFKLNDGSNWKCAICKIQFSDFISLKKHTSEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYTCSRCVATFTTLEERNIHIKTQHTTLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYSYPCGSCSRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -