Alot011888.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376243.1:3829315-3837784[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.41 31 5.7 1.3 1 23 220 243 220 243 0.91 2 10 0.0025 0.19 12.7 2.8 1 23 264 286 264 286 0.98 3 10 0.13 9.5 7.4 0.1 2 23 295 316 294 316 0.95 4 10 0.015 1.2 10.2 0.3 2 23 322 344 321 344 0.97 5 10 6.2e-06 0.00047 20.9 1.0 1 23 350 372 350 372 0.98 6 10 0.00025 0.019 15.9 0.3 1 23 378 401 378 401 0.96 7 10 0.001 0.078 13.9 2.7 1 23 410 432 410 432 0.99 8 10 0.00062 0.047 14.6 1.3 3 23 442 462 441 462 0.98 9 10 8.1e-06 0.00061 20.5 1.8 1 23 468 490 468 490 0.98 10 10 5e-05 0.0038 18.1 2.3 1 22 496 517 496 517 0.94
Sequence Information
- Coding Sequence
- ATGGAGAACATATGCAGATTTTGTTTGAAAGTATCTATTAAAAACATGTGCAGTTTACAAGAATGCGATATACACTATAACATACAAAAATTTCTAACGATAAAAATACCAACTGAAGATTCGTTACCGAGCAATTTATGCAAGGATTGCTTTAAAAAAATATCGCAAATCATTAAATTCTGTATAACTGTCAAAGACAATGAAGATAAATTACAATATTATTCAAGAAATGGTGTATTACAAGATTATTATTCAAGAATTACAAACAATAAACAAATTAAAGATGAACAAAAAGAATTAAAAATAGAATCACATTATGTGAAAGATGAACAAAAAGAATTAAAAATCGAAACACAATATGTGAAAGATGAACAAAAAGAATTAAAAATAGAAATGCATTATTTAAAAGTTGAAGATGATATAAAATCAGACTTTGAGGATTTTGATCATTTGGAACATGAAGAATTGTCTGATGATATTAATGAGACCAATTGCAGTTCTGGTGATGAAACAACACTGCCCTCAATCAAGCAAGAACAGGAATATAATAGTGATGCTCCATTAAAAAAGATAACAAAATTTAGACCAATAAAAAGTCTAATTCCTAAAAGGAAAAATAATAAAAAAGAACCAGAAAGCATTGAATATGTAAAACCATTTACTTGTCTGACATGTTTAATAGAATGTAATTCTCAAGCAGACCTCACAGAACATTACTATGCCAAACACTACAGGAAATTATCTGGTGATAAAAATTATACGGAACATAAATCGGAGGATAAGACTACGTACAGCTGCAACAGTTGTGAGGAAACATGTAATTCAAAGAAAAATATTTTGAAACATATTATGAGTCACACTAATGAGAATGAGAGACCATTGATTTGTAAACTTTGTGCCAGAACATACCGGAGAGTTCCTGATATAGTCCGACATGCTAGAGCACACAACGGCATCAAACTGCAGTGCCCATACAACTGTGGGTTCTCCACCGCTTACCAAGGGTCTATGGAAGAACATAAGAAGAGACACTTGGATGAGTATAAGTATACCTGTGAGACATGCGGCAAGGGTTTCAACACAAAGACTTGGTATGAGCAACACCAGAACCTCCACACTGGACACAAGCCGTTCGCCTGCAATATATGTGGCCTCGCCTTCCCTCTGTCCAGATATCTACAAAATCACAAAAGCACGAGGCATCCGCAGTCTTCAAGCTTGAAACGGTACCAATGTGTCCATTGTGATGAAAAGTGCGACAGTGCCAAAAGTCTTGCTTTACATTTGCAGAAACATGGCATAAAAAAAGATACTGATTCTCTTTGCGATTTTTGCGGCAAGATTGTTACGTCTATTTCTCAACTGCAGTACCATCATAGGATGCATTTGGGAGTGAAGCCATACTCATGCACTATATGCAAGAAGAAGTTTGCGAAGAAGTACAACGTGCAACTCCACATGAGTATCCATACCGGTGGTCAGTCACACGTCTGCGTTCATTGCGGCAAGCAATACTCGCAGCGGAGCACCCTGCTGAAACATCTTAAAAGGTAA
- Protein Sequence
- MENICRFCLKVSIKNMCSLQECDIHYNIQKFLTIKIPTEDSLPSNLCKDCFKKISQIIKFCITVKDNEDKLQYYSRNGVLQDYYSRITNNKQIKDEQKELKIESHYVKDEQKELKIETQYVKDEQKELKIEMHYLKVEDDIKSDFEDFDHLEHEELSDDINETNCSSGDETTLPSIKQEQEYNSDAPLKKITKFRPIKSLIPKRKNNKKEPESIEYVKPFTCLTCLIECNSQADLTEHYYAKHYRKLSGDKNYTEHKSEDKTTYSCNSCEETCNSKKNILKHIMSHTNENERPLICKLCARTYRRVPDIVRHARAHNGIKLQCPYNCGFSTAYQGSMEEHKKRHLDEYKYTCETCGKGFNTKTWYEQHQNLHTGHKPFACNICGLAFPLSRYLQNHKSTRHPQSSSLKRYQCVHCDEKCDSAKSLALHLQKHGIKKDTDSLCDFCGKIVTSISQLQYHHRMHLGVKPYSCTICKKKFAKKYNVQLHMSIHTGGQSHVCVHCGKQYSQRSTLLKHLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441448;
- 90% Identity
- iTF_01526451;
- 80% Identity
- -