Alot016799.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376245.1:12576070-12578121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00042 0.032 15.1 1.0 2 23 326 348 325 348 0.94 2 10 0.23 17 6.5 1.9 1 23 354 376 354 376 0.98 3 10 1.7 1.3e+02 3.8 1.7 1 23 382 405 382 405 0.92 4 10 0.00097 0.073 14.0 0.3 1 21 410 430 410 431 0.93 5 10 0.0007 0.053 14.4 1.7 2 23 449 470 448 470 0.97 6 10 1.5e-05 0.0011 19.7 3.3 1 23 477 499 477 499 0.97 7 10 0.00079 0.06 14.3 2.7 1 23 505 527 505 527 0.96 8 10 2.2e-05 0.0017 19.2 5.6 1 23 533 555 533 555 0.98 9 10 1.8e-05 0.0014 19.5 1.5 2 23 562 583 561 583 0.96 10 10 2.5e-05 0.0019 19.0 1.2 1 23 589 612 589 612 0.98
Sequence Information
- Coding Sequence
- ATGAATACTACAAAAAATGGGTATTGTCGCCTTTGCGCAGAGTTAAAACCACACAATGAACTCACAAACCTACAGACTGACGAAGAAACCTGCCAGAAAGTCGTCAATAAACTGTCGAAATTCAACATAATTATGGATTTCCAGGAGAATATATTACCGAAGACTGTCTGCTTAGTATGTGTAAAATCCTTAGAACGAGCATTTGCTTTCGTAACTGCAGTTGAACAGGCGCAGGAATTTCTCAGTGACTTTAATCTGGTTCAAACAAGAACTGTGAGTAGTGATTCTTATGGTGAAAACACCTTTTACACACCATCACATGTTAATAAAGAAGTTAAAGTCGAAAGCAGTCGGGATCCAATGGATGTAAATGATAATAATGATGATGAAGAATGTGATATTGAGGACAGCTGTAATGTTTACAATGCTGATGATAACAATTTAGGCAGTGAAAAAGTTAATATTGAGAATAAGGACACTAGACTATACTCTTATGATATTGTTGAAGAAAAAATTGCTATAAAAGAAGAAACTGATGAATATACTGCTGTAAATATTGTTAAAAATATTGAAGATAATGAATCTCTTAATTTTAATATTGACTGTAGACATAATCAGTACATCAATGTTAGAGAAAATGATTTGAATATCAAAGACACTAAAGTAGCCTCTGCTTTGAAAGAAAAAGTCAGAAAAAATATTTCAAGAACGGAACACCATTCTGAACCAATCCCACCATTACACGATTCAGTTTATTCTGCAGATTACATAACTGAACAAAACTATAGTAATGGGGGCACCAAAACTGTGGGTCCTGGTGTACAAAATATACATAATGAATCCATTTCTAAAGCAACACCACCTGAACTATTGGATACTACAGAATATTCAGAAGATTTCATAAATAAACAAATTAATAGATTAAGCACTGTGCCTGTGCAATACTTAAAAATGACATGGATGGATTATGAATGGAAGTGTTCTCACTGTGGAACACTGTTCTCAAATATTGAAGAGCTACAGAAACATTCAATGATCTACCACAACACCTGTAATGCTTACCAATGCACAGATTGTAAAATTAAAAAGCAACGTCTCAATGCTTTCATGAAGCATGTCAGATCACACAGGAAGTACTTACATTATTCATGCTACAAATGCTTTGAGAAATTCCCTAGAATGATGGAAACCATATATCACAAGATGAAAATCCATGAGAACTCTAAACACATTTGCTTGGGATGCAACACTCCTTTTTCAACTAAAACTGAATTAGAGGAACATGTCAAAAAGTATTATAATATTCTATGGAGACAGAAAACATTTATTAACAGTGACAATTTAACTTGCAGTACATGCAATAAAGTCTGCGCAAACATTACCGCTTTGAGGAACCACTTAAATAGGCACAAAGAGAAGAAACGTGACCATGTTTGTGACAGATGCGGCAAATGTTTCAATAGTGAACCAAGTTTAAGAACTCACATGGATACACATATCGAAAAGGATTTATATCATTGTGAAATTTGTAAGACTACCTTCAAAACTATATACTCACTACGATACCATGCTAGCATACACTCTGGAATCAAACCATTCACCTGTGATGTCTGCAGTAAATGTTTTAGGACGAAAAGTCAGATCACAAATCATATGAAATTTCACACAGACTATTTTCCAATTACTTGCTCAATTTGTAACAAAAAGTTTCGTACAGACACTTATTTACAAAATCATATGCTTCAGCATACTGGAGAGAAACCATTTTCTTGTGACATTTGTCCAAGAGACTTTACAAACATGGCCAATCGTAACAAACATATGAGACGGAGACATGGTATTGAGATGGCAAAGAGGAGGCAGCCTATTATAAAACAGCAAACAGCTGATGACCCGACTTCCTCTGACCTGGCTACTGGAGAGGCTAAATTTGCAGATCTAGACAAAATGAATGAATGGAAAAACAAAATTATGGAACATCGAAAAAGTCAAAGGGCAAACAATAAGATAAAAAAACTGAAAGTGATTAGGAAGGAATGCAACGAAAATTGA
- Protein Sequence
- MNTTKNGYCRLCAELKPHNELTNLQTDEETCQKVVNKLSKFNIIMDFQENILPKTVCLVCVKSLERAFAFVTAVEQAQEFLSDFNLVQTRTVSSDSYGENTFYTPSHVNKEVKVESSRDPMDVNDNNDDEECDIEDSCNVYNADDNNLGSEKVNIENKDTRLYSYDIVEEKIAIKEETDEYTAVNIVKNIEDNESLNFNIDCRHNQYINVRENDLNIKDTKVASALKEKVRKNISRTEHHSEPIPPLHDSVYSADYITEQNYSNGGTKTVGPGVQNIHNESISKATPPELLDTTEYSEDFINKQINRLSTVPVQYLKMTWMDYEWKCSHCGTLFSNIEELQKHSMIYHNTCNAYQCTDCKIKKQRLNAFMKHVRSHRKYLHYSCYKCFEKFPRMMETIYHKMKIHENSKHICLGCNTPFSTKTELEEHVKKYYNILWRQKTFINSDNLTCSTCNKVCANITALRNHLNRHKEKKRDHVCDRCGKCFNSEPSLRTHMDTHIEKDLYHCEICKTTFKTIYSLRYHASIHSGIKPFTCDVCSKCFRTKSQITNHMKFHTDYFPITCSICNKKFRTDTYLQNHMLQHTGEKPFSCDICPRDFTNMANRNKHMRRRHGIEMAKRRQPIIKQQTADDPTSSDLATGEAKFADLDKMNEWKNKIMEHRKSQRANNKIKKLKVIRKECNEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00037202;
- 90% Identity
- iTF_01526428;
- 80% Identity
- -