Alot003386.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- Sall1
- Assembly
- GCA_947364205.1
- Location
- OX376227.1:19507102-19516094[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 1.9e+02 3.3 0.3 2 23 7 28 6 28 0.96 2 13 0.092 7 7.8 0.8 1 23 1007 1030 1007 1030 0.91 3 13 2.9e-05 0.0022 18.8 2.5 2 23 1134 1155 1133 1155 0.97 4 13 0.00024 0.018 15.9 2.6 1 23 1161 1183 1161 1183 0.98 5 13 0.007 0.53 11.3 2.6 2 23 1190 1211 1189 1212 0.94 6 13 0.043 3.3 8.8 1.5 5 23 1225 1243 1224 1243 0.96 7 13 0.018 1.4 10.0 1.1 3 23 1250 1271 1249 1271 0.96 8 13 0.0016 0.12 13.4 0.5 2 23 1288 1308 1287 1308 0.98 9 13 0.00071 0.054 14.4 1.0 1 20 1314 1333 1314 1336 0.89 10 13 0.00098 0.074 14.0 0.4 1 23 1344 1366 1344 1366 0.98 11 13 0.0054 0.41 11.7 7.2 1 23 1372 1394 1372 1394 0.98 12 13 6.7e-06 0.00051 20.8 1.4 1 23 1400 1424 1400 1424 0.98 13 13 0.001 0.079 13.9 4.2 1 23 1430 1452 1430 1453 0.95
Sequence Information
- Coding Sequence
- ATGGACCAACTCGTGGTGCAGTGCCCCGTGTGCACACTATTCTTGCACAATGGGATAACCTTGGAGTCCCACTTGGATACCCATCCCAAAGACCAGGTTATAAAAGCTTTGTGTAATATAGCAAACAAGGGCTCTAATTATGCCAGCAGGACTTCCACACCGGTACATTCTGAGCGGTCATACAGGAGCAGGTCACGGACACCTGCCACTGATGACAGTGCCAAGTGGACTGGATCACGAAGTAATGAACATGAGCGCTACTGGCGCAGAACACCTAGTAGAGCCTCTAAATCAACACCAGTATCAAATACATCTAGAAACGGTACACCTGATATTAGAATGCTTGATGTTAACTTTGAGAACCATGGTATTGCTGGTGGTGGTACAGGACAACATGTAAACAATCCATTTCATTTAAAAGCTGACAAGCTTCAGCAGACCTTTCAGTGTCCTCCAGTTCCAGAGTATGATTCACAGTATGTTTACTATCCAGAGCAACAAGAAGACAGGGAGATTAAGTATTCCCGGAGTGCTGAGTACAATGCCATGGATAACAATATGTTTTCTTACAATGTGCCACCTATGGGAGGGCCAGGTGTGAAACTGTTACCAGGGGTGCCTAGAAAAGTGAATGACCTTGTTAAAGTTCTCCCGAAACCAAATAATATACTCCTTAAGACCAATATGGGTGGTGTGCAATACATAGGTCCAGGGGTCAAGCCCATGCATGTTATGGTGCCATCTGCACCTACTTTCATGCAGAAGAATGTGCAAAACAACATGATCATGACAGGCAGTGTACCAAACCCACAGATGCACATTGATACCAAAACAACTTCACCCCCTCTAGCTAGCAACCAACTGAACCAAATGACTTCTGGTGCATTCACTCCAGGAACAACTGTTGTTACCCAAAACTCCCAAATTATTTACAGAGAAATGGTGCACAACATAGATGGTAAACCCTTTATAACTACCATGCCCACAGTTCTTGGTGCTCATGACAATGTCTCTAACTTAGCTCAAGCTAGCTCCATGTATCAAAACGTTATGGTTGTAGATCAGTTTGGAAATACTTCATGTATGTATACAACACCTCAACAAATGATGAACAAAGCATGTCCCACATCCATTTATAATGAGTCTGGTACTCTCATGGCTAGTGCACACATTGATAAATCTGTACAAAATATGACTGATCCGAAAACACTTATTATTGAGGTTGGTCCACTCATAGGTTCAACTCATGAAAATATTTGTGAAGATCCAAGGTCCACTGGGCCACTGCCAGTAACCAGCAGTCCGGTTGGCCGTACTGAGATACCCATTGAGACAGTGGACCCAAAATATGAAATGTCAGGCAGTACTAAAGGTTTAAAAATTCTGAGCAACATTAAGGTTGAAGTTCCTGTGCAACATCACAAGAACATGGTTAATACTGTCATGGATCTTACTGGGACTAATGAGACAGACTATCCTGTAGAACGTGTAGAATCACCTGACAAGATCCTGCCTGATCTAGAAGACAACAACCCAATGTCATCTGATGACACTCAGCCTTCATCAATGTCCAGTGCTGACAGCATTGTCTCCCATACATTTTCTGTGATAAAGAATGTTGGTAATCCAAGCAAAAGTTCTGACAATAAGTTGGACACAGACTTTTCAGACAGCTGTCCTGTGCCAGATTTAATATGTAATGAGAAACCTTCCATATCACCTTGTAGTGAGTTGTCAGAAAATGGCGACAATTCAACCGATCGTACCTCAATGTCTCCCAAACTTGAGAGTAATCAAGTTAGCCATAGTAACCTAGGACTTCCAGAAAAGAAAATTCAGCTTTCACAGAAGCCTTACAGGCACAACACACTAAGACTGAACAATATTTTTGTGAAGAAGCACAAGAAAGTTTTACAGATTAAGAATGTCAAGGCATTTCCTGTGAGCATTACAAAGAAAACAGAACAAAGAGACACTATTCCGACGTCCTCTACTTGCAGATCGCCGGAAAATTTTACCATGAATAAACTGCACCAAGCAGATAAGACAGATTGTAAGGAGAAGACCAATCTCTTGCAAACCATATCTGTTGAGGAGATCAAGGAGAATGATGAAAATAATGACTTTGATGCTGACACATCAGAACAGTCTATGGACATTGAACCACTACCACCTGCTGATTTGAATCAGCCTGAGTTTGCTGCAAATATTGATATGATTCAGGTGAAGGAGGAAATAAACTCAAGCAATGAAGGAGGTTTTAGTAACGAGCCAGTGACGACGGACCGCATGCTGACTCCTCTAGAAACATTGCGACCTATTAATGTTATTAGCTACGGTAATCTGTCCAATGAGGATTTTAACGAGGAGTCCAACGACAGGGAGTTACTGGATCTTGAAGCGGCGTCTAAGAACAAACAGTTTGTCACCATGATGAACGAGAACTATTTCGGCGACAATATTTACGCAGATTACTTTACTCCCGACCGTGTGGAGGCATTCGACGCCGAGCGCGAGGCGGCGGGTTTCAAGGAGGGCGCTAAAGATGGTATGTACCTCTGGGGTGAGCCTTCACAGAAGGACAACGACTTTGTGCTGCCTAACTTTATACACGAGAGTTACAAAATAGCCGAGAGTAATGGGATAGATTATTCTGAGCTAGGTGCTAGAGAAGTGCAGGTGGATGTGGAGGTGGACGGGTGCGAGCGAGACAGCAAGGCGGACGTGCTGAGCGAGGGCCGCAGCGAGGGTGACCCGCCCATGAACATCTGTGCCGACGAGCGCATGCCGCCGCGCGGCGAGCTCAGCGAACAGGAGAGCAACGGAGACATGGAGTCACCCTGGAGTGGGATGTACACAGAGGTGACCCCCGCGGAGCCCTACGATTTAATCGCCCGCGAGAGCTGGGTGTCGGACGGGTCAGAAGTGGACGCGAGCGAGAAGCGGGAGCCCATCGAAGAAGACTTACAGTTGCCACTGCCTCCACAACTAGCGCCAGTGTTCAGCCGGCCGCGCGTGCACACGTGCGCGGCGTGCGGCGCCACGTGCACGTCGCTGAAGGAGCTGCGCGCGCACAAGGCGCTAGTGCACGCGCTGCCTACGTGCTCGGCCAGCAAGACGTCCTACAGCAGGCTTGTGACAGCGCGAGCCATCAAGAAGGAAGAAAAACCTGATACAAACAACCTGTTACCACCAATAGACTCAAAAGACTCGATATCATCGACGATCCTCCAAGTTTACGAGAGCATTCAAGTTGAGGAGGCCAAGCCGAAGATCGAGGTAGACCGACTGATCAAGCAGGAGGTAAAGCGTCGACGGAAGGACTACGTGTGTCCGACGTGTAAAGTAGACCAGGGAACTGATGCGCAGTTCCACGCTCATCTGAAGATACATCCCCTGGAGTGCCTCACGTGTGGCAAGTGCTTCTTCAGAAGAGCCAACCTGTCCTTGCATATAAAGACACATCTAGGAATTAAGAATTATAAATGCGAGGTTTGCGAGAAGCGTTTCGTGACGCGTCAGAAGCTGTCGGAGCACCACAACGTGCACACGGGCCGCGCGCCCATCAAGTGCACCGTGTGCGACGACACCTTCCGCCGGTACTCCAACATGGTGCAACACAGGGACCGCCACCACCTGTCCAAGCGCGCCAAGGTGCGCGACTTCGTGTGCCAGTGCGGCCTGGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCAGGAGACGCACGCCGACCGGCCGCGCGCGTGCCTGTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTTCCTGGCCGAGCGACACAAGGGCAAGCAGGAGAACGTGCAGTGTCCCGTCTGCAAGCAGGTGTACCTGCGCTCGAACCTGCGCACACACTTACAGACGCACAGCGGACAGCGGCCCTACATGTGCATCATCTGCAACAAGTCCTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACGCGTCGCGCTCGGCCAAGCCCTACAAGTGCAGCCTGTGCAAGGGCGCCTTCATCCGCCAGACCGAGTACATCTCGCACATGAACGCGCACAAGTCCGTGCGGCCCTACACCTGCAATTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGGCCGAGTGCGGCAAGTCGTTCCACCGCAGCTACTATCTGTCGGAGCACATGAAGGTGCACAGCGGGGCGCGGCCCTTCGCCTGCAACATCTGCGGCAAGACGTCCAGCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCGCGCGAGCCCGTCGCCACCGAGGCGTAA
- Protein Sequence
- MDQLVVQCPVCTLFLHNGITLESHLDTHPKDQVIKALCNIANKGSNYASRTSTPVHSERSYRSRSRTPATDDSAKWTGSRSNEHERYWRRTPSRASKSTPVSNTSRNGTPDIRMLDVNFENHGIAGGGTGQHVNNPFHLKADKLQQTFQCPPVPEYDSQYVYYPEQQEDREIKYSRSAEYNAMDNNMFSYNVPPMGGPGVKLLPGVPRKVNDLVKVLPKPNNILLKTNMGGVQYIGPGVKPMHVMVPSAPTFMQKNVQNNMIMTGSVPNPQMHIDTKTTSPPLASNQLNQMTSGAFTPGTTVVTQNSQIIYREMVHNIDGKPFITTMPTVLGAHDNVSNLAQASSMYQNVMVVDQFGNTSCMYTTPQQMMNKACPTSIYNESGTLMASAHIDKSVQNMTDPKTLIIEVGPLIGSTHENICEDPRSTGPLPVTSSPVGRTEIPIETVDPKYEMSGSTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGTNETDYPVERVESPDKILPDLEDNNPMSSDDTQPSSMSSADSIVSHTFSVIKNVGNPSKSSDNKLDTDFSDSCPVPDLICNEKPSISPCSELSENGDNSTDRTSMSPKLESNQVSHSNLGLPEKKIQLSQKPYRHNTLRLNNIFVKKHKKVLQIKNVKAFPVSITKKTEQRDTIPTSSTCRSPENFTMNKLHQADKTDCKEKTNLLQTISVEEIKENDENNDFDADTSEQSMDIEPLPPADLNQPEFAANIDMIQVKEEINSSNEGGFSNEPVTTDRMLTPLETLRPINVISYGNLSNEDFNEESNDRELLDLEAASKNKQFVTMMNENYFGDNIYADYFTPDRVEAFDAEREAAGFKEGAKDGMYLWGEPSQKDNDFVLPNFIHESYKIAESNGIDYSELGAREVQVDVEVDGCERDSKADVLSEGRSEGDPPMNICADERMPPRGELSEQESNGDMESPWSGMYTEVTPAEPYDLIARESWVSDGSEVDASEKREPIEEDLQLPLPPQLAPVFSRPRVHTCAACGATCTSLKELRAHKALVHALPTCSASKTSYSRLVTARAIKKEEKPDTNNLLPPIDSKDSISSTILQVYESIQVEEAKPKIEVDRLIKQEVKRRRKDYVCPTCKVDQGTDAQFHAHLKIHPLECLTCGKCFFRRANLSLHIKTHLGIKNYKCEVCEKRFVTRQKLSEHHNVHTGRAPIKCTVCDDTFRRYSNMVQHRDRHHLSKRAKVRDFVCQCGLVFHSRAKLRWHQETHADRPRACLYCSDKFVHAASLTRHVRRSHNEYFLAERHKGKQENVQCPVCKQVYLRSNLRTHLQTHSGQRPYMCIICNKSFTTKWNLKLHRWTHASRSAKPYKCSLCKGAFIRQTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908225;
- 90% Identity
- iTF_01026666;
- 80% Identity
- -